Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP11_F_J13
         (891 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0245 - 1611135-1611557                                           32   0.70 
07_03_1575 - 27848977-27849095,27849254-27849302,27850270-278502...    29   3.8  

>02_01_0245 - 1611135-1611557
          Length = 140

 Score = 31.9 bits (69), Expect = 0.70
 Identities = 16/50 (32%), Positives = 26/50 (52%)
 Frame = +3

Query: 345 TLKMKRINKSKPLVIIQCYEDRQPTLPLKKTDHLPFEATNDPPIPKREAT 494
           T+ +K +  S+P +  +  E+ + T P  +   LP EA   PP PK+  T
Sbjct: 46  TVSLKPVKVSRPQLGDEEEEEEEVTTPRGEECRLPAEAATCPPAPKKPRT 95


>07_03_1575 - 27848977-27849095,27849254-27849302,27850270-27850287,
            27850798-27851786,27852119-27852733,27852893-27852921,
            27853990-27854453,27854530-27854654,27854743-27855025,
            27855112-27856102,27856965-27857576,27857666-27858630
          Length = 1752

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 3/44 (6%)
 Frame = +3

Query: 378  PLVIIQCYEDRQPTLPLKK--TDHLPFEATN-DPPIPKREATED 500
            PL +++ YE +  T  LKK   DHLP +  +  PP PK+   +D
Sbjct: 1081 PLSLLKAYEAKALTRLLKKKDIDHLPKKMIDLKPPKPKKSGFDD 1124


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,300,070
Number of Sequences: 37544
Number of extensions: 381443
Number of successful extensions: 705
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 681
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 703
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2506954360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)