Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP11_F_J13
         (891 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U67947-1|AAB07557.2| 1147|Caenorhabditis elegans Hypothetical pr...    35   0.090
Z81039-1|CAB02771.1|  150|Caenorhabditis elegans Hypothetical pr...    29   4.5  
Z81143-7|CAB03517.2|  383|Caenorhabditis elegans Hypothetical pr...    28   7.8  
Z81030-10|CAB02715.1|  290|Caenorhabditis elegans Hypothetical p...    28   7.8  

>U67947-1|AAB07557.2| 1147|Caenorhabditis elegans Hypothetical protein
            H03E18.1 protein.
          Length = 1147

 Score = 34.7 bits (76), Expect = 0.090
 Identities = 26/115 (22%), Positives = 49/115 (42%)
 Frame = +3

Query: 366  NKSKPLVIIQCYEDRQPTLPLKKTDHLPFEATNDPPIPKREATEDXXXXXXXXITNGLQN 545
            N+S+P+V+ Q  +  +  +P+K+ D   F    D  +  +E TE         +T   +N
Sbjct: 688  NESEPVVVKQDVKITEEPVPMKRLDEKAFLDKIDQVVESQEETE-----KKKKVTT--KN 740

Query: 546  GNHLAKADNILKTVLDLKTSNCRKNGTLTRXPTPDYVDKAHVQLKTVKDEKAEPK 710
              H+   D +LK +  ++ ++  +    T   TP          +T   +K E K
Sbjct: 741  SEHILDTDEVLKKIEKVEATSTTETEKPTTETTPATTTVTTTTEETTTPKKQEVK 795


>Z81039-1|CAB02771.1|  150|Caenorhabditis elegans Hypothetical
           protein C25D7.1 protein.
          Length = 150

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 15/47 (31%), Positives = 27/47 (57%)
 Frame = +3

Query: 582 TVLDLKTSNCRKNGTLTRXPTPDYVDKAHVQLKTVKDEKAEPKNAXR 722
           T + ++ + CR+  T+ R P P   DKA VQ   ++++  +PK A +
Sbjct: 72  THMIIEPNKCRQL-TINRMPGPIQKDKAIVQYLQIENDVQDPKTAFK 117


>Z81143-7|CAB03517.2|  383|Caenorhabditis elegans Hypothetical
           protein ZK265.5 protein.
          Length = 383

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
 Frame = -3

Query: 742 KXXKKKXRXAFLGSAFSSLTVFSCTCA-LST*SGVGXRVRVPFFLQFEVLRSKTVFNMLS 566
           K  +KK R    G  F +  +FSCT A ++T SG+  +V +   + F +  S  ++ ++ 
Sbjct: 159 KDYEKKSRHWIFGLIFVAQNIFSCTMAVVTTTSGLTFQVLISGVI-FSLFCSAVIYALVE 217

Query: 565 AF 560
            F
Sbjct: 218 YF 219


>Z81030-10|CAB02715.1|  290|Caenorhabditis elegans Hypothetical
           protein C01G10.14 protein.
          Length = 290

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 15/47 (31%), Positives = 27/47 (57%)
 Frame = +3

Query: 582 TVLDLKTSNCRKNGTLTRXPTPDYVDKAHVQLKTVKDEKAEPKNAXR 722
           T + ++ + CR+  T+ R P P   DKA VQ   ++++  +PK A +
Sbjct: 72  THMIIEPNKCRQL-TINRMPGPIQKDKAIVQYLQIENDVQDPKAAFK 117


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,591,949
Number of Sequences: 27780
Number of extensions: 352632
Number of successful extensions: 860
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 831
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 859
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2255353870
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)