Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP11_F_J11
         (866 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0686 - 30900748-30902167,30903442-30904742                       32   0.68 
01_07_0188 - 41866689-41866763,41866889-41867155,41867277-418677...    30   2.8  
01_03_0005 + 11568545-11569119,11569179-11569191                       29   3.6  

>02_05_0686 - 30900748-30902167,30903442-30904742
          Length = 906

 Score = 31.9 bits (69), Expect = 0.68
 Identities = 14/33 (42%), Positives = 14/33 (42%)
 Frame = +1

Query: 646 PPPPXXKKXPXPXXGXKXGGGXXFXPPPKXXGG 744
           PPPP   K P P      GG     PPP   GG
Sbjct: 353 PPPPPPPKGPSPPPPPPPGGKKGGPPPPPPKGG 385



 Score = 31.1 bits (67), Expect = 1.2
 Identities = 25/100 (25%), Positives = 28/100 (28%)
 Frame = +1

Query: 508 NPSXPLXLGPXFPXKXFFXPXXPLXXXXGXPLFSPPXXFFXXXXXXPPPPXXKKXPXPXX 687
           +PS PL  G   P +        +      P   PP          PPPP     P P  
Sbjct: 285 SPSLPLPPGRESPSRPQSIAAAAVASPAPPP--PPPPKPAAAAPPPPPPPKAAPPPPPPK 342

Query: 688 GXKXGGGXXFXPPPKXXGGXXKKXKKKKXXXFXXPPPPXP 807
           G          PPP    G               PPPP P
Sbjct: 343 GPPPPPPAKGPPPPPPPKGPSPPPPPPPGGKKGGPPPPPP 382


>01_07_0188 -
           41866689-41866763,41866889-41867155,41867277-41867722,
           41867945-41868033,41868279-41868368,41868661-41868739,
           41868979-41869042,41869597-41869684,41869776-41869836,
           41869906-41869969,41870134-41870188,41870275-41870346,
           41870469-41870551,41870629-41870724,41871279-41871383,
           41872159-41872227,41872470-41872561,41872667-41872886
          Length = 704

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 12/29 (41%), Positives = 14/29 (48%)
 Frame = +1

Query: 646 PPPPXXKKXPXPXXGXKXGGGXXFXPPPK 732
           PPPP  +  P P  G   GG     PPP+
Sbjct: 10  PPPPPPQHPPPPQAGGGGGGEFYRGPPPQ 38



 Score = 29.1 bits (62), Expect = 4.8
 Identities = 11/28 (39%), Positives = 13/28 (46%)
 Frame = +1

Query: 646 PPPPXXKKXPXPXXGXKXGGGXXFXPPP 729
           PPPP   + P P      GGG  +  PP
Sbjct: 9   PPPPPPPQHPPPPQAGGGGGGEFYRGPP 36


>01_03_0005 + 11568545-11569119,11569179-11569191
          Length = 195

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 18/57 (31%), Positives = 22/57 (38%), Gaps = 3/57 (5%)
 Frame = +1

Query: 646 PPPPXXKKXPXPXXGXKXGGGXXFXPPPKXXGGXXKKXKKK---KXXXFXXPPPPXP 807
           PPPP          G   GGG  + PPP   GG      ++       +  PPPP P
Sbjct: 93  PPPPYS----GGGGGSSTGGGGIYYPPPTGGGGGGGGGWQQGGGGGGAYPTPPPPNP 145


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,030,842
Number of Sequences: 37544
Number of extensions: 385644
Number of successful extensions: 744
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 515
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 665
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2432722788
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)