Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP11_F_J11
         (866 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def...    31   1.1  
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def...    31   1.1  
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.    31   1.1  
U41264-2|AAA82422.1|  124|Caenorhabditis elegans Ribosomal prote...    28   9.9  

>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoformb protein.
          Length = 1437

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 24/81 (29%), Positives = 24/81 (29%)
 Frame = +1

Query: 565 PXXPLXXXXGXPLFSPPXXFFXXXXXXPPPPXXKKXPXPXXGXKXGGGXXFXPPPKXXGG 744
           P   L    G P   PP          PPPP     P P       GG    PPP   GG
Sbjct: 715 PPPGLPPITGGPPPPPPPGGLPPITGGPPPP-----PPPGGLPPISGGPP--PPPPPPGG 767

Query: 745 XXKKXKKKKXXXFXXPPPPXP 807
                       F   PPP P
Sbjct: 768 CPPPPPPPPPGGFKGGPPPPP 788


>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoforma protein.
          Length = 1435

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 24/81 (29%), Positives = 24/81 (29%)
 Frame = +1

Query: 565 PXXPLXXXXGXPLFSPPXXFFXXXXXXPPPPXXKKXPXPXXGXKXGGGXXFXPPPKXXGG 744
           P   L    G P   PP          PPPP     P P       GG    PPP   GG
Sbjct: 715 PPPGLPPITGGPPPPPPPGGLPPITGGPPPP-----PPPGGLPPISGGPP--PPPPPPGG 767

Query: 745 XXKKXKKKKXXXFXXPPPPXP 807
                       F   PPP P
Sbjct: 768 CPPPPPPPPPGGFKGGPPPPP 788


>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
          Length = 1018

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 24/81 (29%), Positives = 24/81 (29%)
 Frame = +1

Query: 565 PXXPLXXXXGXPLFSPPXXFFXXXXXXPPPPXXKKXPXPXXGXKXGGGXXFXPPPKXXGG 744
           P   L    G P   PP          PPPP     P P       GG    PPP   GG
Sbjct: 298 PPPGLPPITGGPPPPPPPGGLPPITGGPPPP-----PPPGGLPPISGGPP--PPPPPPGG 350

Query: 745 XXKKXKKKKXXXFXXPPPPXP 807
                       F   PPP P
Sbjct: 351 CPPPPPPPPPGGFKGGPPPPP 371


>U41264-2|AAA82422.1|  124|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 33 protein.
          Length = 124

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = -2

Query: 145 MIVLILMYNYKVKLGSCLTVRVRRATGKLTRKHXN 41
           ++ L   +N  +K G  +  R R   GK+TR H N
Sbjct: 60  VVYLYKAHNKTLKTGHTVATRTRAIWGKITRPHGN 94


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,389,230
Number of Sequences: 27780
Number of extensions: 220855
Number of successful extensions: 459
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 305
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 414
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2171433726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)