Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP11_F_J09
         (956 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ438610-1|CAD27473.1|  838|Anopheles gambiae putative microtubu...    35   0.003
AJ130951-1|CAA10260.1|  189|Anopheles gambiae SG3 protein protein.     24   7.8  

>AJ438610-1|CAD27473.1|  838|Anopheles gambiae putative microtubule
           binding protein protein.
          Length = 838

 Score = 35.1 bits (77), Expect = 0.003
 Identities = 31/114 (27%), Positives = 36/114 (31%), Gaps = 6/114 (5%)
 Frame = -3

Query: 564 PRNPTDPAQPSPGXXGGK-----GXPXXNRPPPAGGXXLXVRQNXSPRPPXGXXXMEXXP 400
           PR  T P QP P   GG      G P   RP    G    ++    PRPP          
Sbjct: 201 PRTGT-PTQPQPPRPGGMYPQPPGVPMPMRPQMPPGAVPGMQPGMQPRPPSAQGMQRPPM 259

Query: 399 XXDPXXXXXXXXXXGPXPRXMPLXXHXXRAMXGG-GGPXQAWXPXPSGXXGXLP 241
              P          GP P+  P   +    M  G  GP +   P   G  G  P
Sbjct: 260 MGQPPPIRPPNPMGGPRPQISPQNSNLSGGMPSGMVGPPRPPMPMQGGAPGGPP 313



 Score = 23.8 bits (49), Expect = 7.8
 Identities = 16/41 (39%), Positives = 18/41 (43%), Gaps = 2/41 (4%)
 Frame = -3

Query: 549 DPAQPSPGXXGGKG--XPXXNRPPPAGGXXLXVRQNXSPRP 433
           DPA+P+PG   G     P  N  PP  G      Q   PRP
Sbjct: 177 DPARPNPGMPPGPQMMRPPGNVGPPRTGTP---TQPQPPRP 214


>AJ130951-1|CAA10260.1|  189|Anopheles gambiae SG3 protein protein.
          Length = 189

 Score = 23.8 bits (49), Expect = 7.8
 Identities = 10/17 (58%), Positives = 10/17 (58%), Gaps = 1/17 (5%)
 Frame = +2

Query: 674 RPGRXGWXXPXXPP-RP 721
           RPGR  W  P  PP RP
Sbjct: 78  RPGRPWWSVPGIPPFRP 94


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 612,545
Number of Sequences: 2352
Number of extensions: 9936
Number of successful extensions: 18
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 563,979
effective HSP length: 64
effective length of database: 413,451
effective search space used: 105016554
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)