Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP11_F_J09
(956 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF045646-2|AAK29827.1| 371|Caenorhabditis elegans Collagen prot... 40 0.002
Z81479-3|CAB03942.1| 283|Caenorhabditis elegans Hypothetical pr... 39 0.005
Z81479-2|CAB03941.1| 283|Caenorhabditis elegans Hypothetical pr... 39 0.005
Z22964-2|CAA80537.1| 1759|Caenorhabditis elegans a2(IV) collagen... 36 0.032
Z22964-1|CAA80536.1| 1758|Caenorhabditis elegans a2(IV) collagen... 36 0.032
U53342-4|AAA96216.1| 1758|Caenorhabditis elegans Lethal protein ... 36 0.032
U53342-3|AAA96215.1| 1759|Caenorhabditis elegans Lethal protein ... 36 0.032
U22327-1|AAA64312.1| 1795|Caenorhabditis elegans alpha2(IV) coll... 36 0.032
Z67990-1|CAA91932.1| 316|Caenorhabditis elegans Hypothetical pr... 35 0.075
U40187-2|AAA81159.1| 282|Caenorhabditis elegans Collagen protei... 35 0.075
M25479-1|AAA27993.1| 282|Caenorhabditis elegans collagen protein. 35 0.099
AF000198-8|AAP68908.1| 435|Caenorhabditis elegans Collagen prot... 35 0.099
Z49938-3|CAA90188.1| 306|Caenorhabditis elegans Hypothetical pr... 34 0.13
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 34 0.17
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 34 0.17
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 34 0.17
AL033536-4|CAA22144.2| 1582|Caenorhabditis elegans Hypothetical ... 32 0.53
Z68507-1|CAA92826.1| 337|Caenorhabditis elegans Hypothetical pr... 31 0.92
U80451-8|AAB37842.2| 288|Caenorhabditis elegans Collagen protei... 31 0.92
Z46791-4|CAA86758.1| 317|Caenorhabditis elegans Hypothetical pr... 31 1.2
V00147-1|CAA23463.1| 296|Caenorhabditis elegans protein ( Caeno... 31 1.2
J01047-1|AAA27988.1| 296|Caenorhabditis elegans protein ( C.ele... 31 1.2
AC084197-24|AAM44390.1| 297|Caenorhabditis elegans Collagen pro... 31 1.2
Z68113-3|CAA92150.1| 333|Caenorhabditis elegans Hypothetical pr... 31 1.6
U55366-4|AAA97982.1| 310|Caenorhabditis elegans Collagen protei... 31 1.6
AF036699-4|AAB88358.1| 281|Caenorhabditis elegans Collagen prot... 31 1.6
Z82268-5|CAB05195.1| 304|Caenorhabditis elegans Hypothetical pr... 30 2.1
Z68301-5|CAA92620.1| 301|Caenorhabditis elegans Hypothetical pr... 30 2.1
V00148-1|CAA23464.1| 301|Caenorhabditis elegans protein ( Caeno... 30 2.1
J01048-1|AAA27990.1| 301|Caenorhabditis elegans protein ( C.ele... 30 2.1
AY347575-1|AAP97869.1| 301|Caenorhabditis elegans COLlagen stru... 30 2.1
AF003139-6|AAB54156.1| 327|Caenorhabditis elegans Collagen prot... 30 2.1
Z95559-1|CAB08999.1| 289|Caenorhabditis elegans Hypothetical pr... 30 2.8
Z74472-4|CAA98942.1| 301|Caenorhabditis elegans Hypothetical pr... 30 2.8
Z71178-2|CAA94875.1| 297|Caenorhabditis elegans Hypothetical pr... 30 2.8
Z54237-4|CAN86899.1| 297|Caenorhabditis elegans Hypothetical pr... 30 2.8
U61948-2|AAB03143.2| 345|Caenorhabditis elegans Collagen protei... 30 2.8
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 30 2.8
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 30 2.8
M25480-1|AAA27986.1| 326|Caenorhabditis elegans collagen protein. 30 2.8
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 30 2.8
AF026211-4|AAB71295.1| 416|Caenorhabditis elegans Collagen prot... 30 2.8
Z70682-4|CAA94581.1| 299|Caenorhabditis elegans Hypothetical pr... 24 3.5
Z82083-5|CAB04973.1| 298|Caenorhabditis elegans Hypothetical pr... 29 3.7
Z81124-1|CAB03369.1| 312|Caenorhabditis elegans Hypothetical pr... 29 3.7
Z79694-6|CAB01958.1| 316|Caenorhabditis elegans Hypothetical pr... 29 3.7
Z79694-5|CAB01961.1| 316|Caenorhabditis elegans Hypothetical pr... 29 3.7
Z79694-1|CAB01959.1| 303|Caenorhabditis elegans Hypothetical pr... 29 3.7
Z68215-7|CAA92453.1| 289|Caenorhabditis elegans Hypothetical pr... 29 3.7
AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical ... 29 3.7
Z81138-4|CAB03474.1| 304|Caenorhabditis elegans Hypothetical pr... 29 4.9
Z81138-3|CAB63321.1| 304|Caenorhabditis elegans Hypothetical pr... 29 4.9
Z81138-1|CAB03475.1| 304|Caenorhabditis elegans Hypothetical pr... 29 4.9
Z71177-3|CAA94869.1| 325|Caenorhabditis elegans Hypothetical pr... 29 4.9
AF040642-7|AAB94952.1| 329|Caenorhabditis elegans Collagen prot... 29 4.9
Z68219-2|CAA92476.1| 300|Caenorhabditis elegans Hypothetical pr... 29 6.5
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 29 6.5
U50191-2|AAK31556.2| 335|Caenorhabditis elegans Dumpy : shorter... 29 6.5
U50191-1|AAO38600.2| 372|Caenorhabditis elegans Dumpy : shorter... 29 6.5
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 29 6.5
L12692-1|AAA17395.2| 356|Caenorhabditis elegans collagen protein. 29 6.5
AL132952-24|CAB61143.2| 351|Caenorhabditis elegans Hypothetical... 29 6.5
Z69383-13|CAA93404.2| 181|Caenorhabditis elegans Hypothetical p... 28 8.6
U41553-3|AAA83293.1| 289|Caenorhabditis elegans Collagen protei... 28 8.6
M25481-1|AAA27987.1| 283|Caenorhabditis elegans collagen protein. 28 8.6
AF022985-10|AAB69961.1| 325|Caenorhabditis elegans Collagen pro... 28 8.6
AF000198-7|AAB53052.1| 418|Caenorhabditis elegans Collagen prot... 28 8.6
AC024775-6|AAK68452.2| 304|Caenorhabditis elegans Collagen prot... 28 8.6
>AF045646-2|AAK29827.1| 371|Caenorhabditis elegans Collagen protein
103 protein.
Length = 371
Score = 40.3 bits (90), Expect = 0.002
Identities = 36/108 (33%), Positives = 37/108 (34%)
Frame = -3
Query: 798 GXECFXSPPXXXPPPRXGXDFXSXXAGRGGXXGXXQPNRPGRGXGAXXXGAXPRXXFXGK 619
G C SP PP G AG G G P +PG GA GA K
Sbjct: 128 GGGCQCSPSSNTCPP--GPRGPPGQAGLDGLPGA--PGQPGSNGGAGSNGASEGSAGGCK 183
Query: 618 AXXRGXXXTPAPXRXXXXPRNPTDPAQPSPGXXGGKGXPXXNRPPPAG 475
G P P P N P PS G GG G P P PAG
Sbjct: 184 TCPAGPPGPPGPAGQAGRPGNDGQPGAPSFG--GGVGAP--GAPGPAG 227
Score = 29.1 bits (62), Expect = 4.9
Identities = 23/84 (27%), Positives = 25/84 (29%), Gaps = 1/84 (1%)
Frame = -3
Query: 720 GRGGXXGXXQPNRPGRGXGAXXXGAXPRXXFXGKAXXRGXXXTPAPXRXXXXPRNPTDPA 541
GR G +RPG A G G G P P P P
Sbjct: 242 GRPGKNAQGGSSRPGPPGPAGPPGPPGNNGAPGGGYGVGPPGPPGPSGRPGAPGQPGPDG 301
Query: 540 QP-SPGXXGGKGXPXXNRPPPAGG 472
QP +PG G G P P G
Sbjct: 302 QPGAPGNDGTPGTDAAYCPCPGRG 325
>Z81479-3|CAB03942.1| 283|Caenorhabditis elegans Hypothetical
protein C34F6.3 protein.
Length = 283
Score = 39.1 bits (87), Expect = 0.005
Identities = 33/106 (31%), Positives = 37/106 (34%), Gaps = 2/106 (1%)
Frame = +2
Query: 449 FCLTXRXXPP-AGGGRLXXGXPFPPXXPG-LGWAGSVGLRGXXXXRXGAGVXXXPRXXAX 622
FC PP A GG G P PP PG LG G G RG R G
Sbjct: 135 FCFDCPAGPPGAVGGPGPKGPPGPPGGPGELGGPGRGGNRGPPGPRGPPGEAGPDGEGGR 194
Query: 623 PXKXXLGXAPXXXAPXPRPGRXGWXXPXXPPRPAXXXXKSXPXRGG 760
P + G +P +PG+ G P P P P R G
Sbjct: 195 PGQ--AGQTRSAPSPPGQPGQPG--EPGSPGEPGPDGRAGHPGRNG 236
Score = 36.7 bits (81), Expect = 0.025
Identities = 31/102 (30%), Positives = 34/102 (33%), Gaps = 1/102 (0%)
Frame = -3
Query: 777 PPXXXPPPRXGXDFXSXXAGRGGXXGXXQPNRPGRGXGAXXXGAXPRXXFXGKAXXRGXX 598
P PP G GRGG G P P G G P G+A
Sbjct: 150 PGPKGPPGPPGGPGELGGPGRGGNRGPPGPRGPPGEAGPDGEGGRP-----GQAGQ--TR 202
Query: 597 XTPAPXRXXXXPRNPTDPAQPSPGXXGGKGXPXXNRPP-PAG 475
P+P P P P +P P G G P N PP P G
Sbjct: 203 SAPSPPGQPGQPGEPGSPGEPGP--DGRAGHPGRNGPPGPPG 242
Score = 29.1 bits (62), Expect = 4.9
Identities = 28/101 (27%), Positives = 29/101 (28%), Gaps = 3/101 (2%)
Frame = -3
Query: 723 AGRGGXXGXXQPNRP-GRGXGAXXXGAXPRXXFXGKAXXRGXXXTPAPXRXXXXP--RNP 553
AG G G P P G G G R G RG P P
Sbjct: 141 AGPPGAVGGPGPKGPPGPPGGPGELGGPGRGGNRGPPGPRGPPGEAGPDGEGGRPGQAGQ 200
Query: 552 TDPAQPSPGXXGGKGXPXXNRPPPAGGXXLXVRQNXSPRPP 430
T A PG G G P P G +N P PP
Sbjct: 201 TRSAPSPPGQPGQPGEPGSPGEPGPDGRAGHPGRNGPPGPP 241
>Z81479-2|CAB03941.1| 283|Caenorhabditis elegans Hypothetical
protein C34F6.2 protein.
Length = 283
Score = 39.1 bits (87), Expect = 0.005
Identities = 33/106 (31%), Positives = 37/106 (34%), Gaps = 2/106 (1%)
Frame = +2
Query: 449 FCLTXRXXPP-AGGGRLXXGXPFPPXXPG-LGWAGSVGLRGXXXXRXGAGVXXXPRXXAX 622
FC PP A GG G P PP PG LG G G RG R G
Sbjct: 135 FCFDCPAGPPGAVGGPGPKGPPGPPGGPGELGGPGRGGNRGPPGPRGPPGEAGPDGEGGR 194
Query: 623 PXKXXLGXAPXXXAPXPRPGRXGWXXPXXPPRPAXXXXKSXPXRGG 760
P + G +P +PG+ G P P P P R G
Sbjct: 195 PGQ--AGQTRSAPSPPGQPGQPG--EPGSPGEPGPDGRAGHPGRNG 236
Score = 36.7 bits (81), Expect = 0.025
Identities = 31/102 (30%), Positives = 34/102 (33%), Gaps = 1/102 (0%)
Frame = -3
Query: 777 PPXXXPPPRXGXDFXSXXAGRGGXXGXXQPNRPGRGXGAXXXGAXPRXXFXGKAXXRGXX 598
P PP G GRGG G P P G G P G+A
Sbjct: 150 PGPKGPPGPPGGPGELGGPGRGGNRGPPGPRGPPGEAGPDGEGGRP-----GQAGQ--TR 202
Query: 597 XTPAPXRXXXXPRNPTDPAQPSPGXXGGKGXPXXNRPP-PAG 475
P+P P P P +P P G G P N PP P G
Sbjct: 203 SAPSPPGQPGQPGEPGSPGEPGP--DGRAGHPGRNGPPGPPG 242
Score = 29.1 bits (62), Expect = 4.9
Identities = 28/101 (27%), Positives = 29/101 (28%), Gaps = 3/101 (2%)
Frame = -3
Query: 723 AGRGGXXGXXQPNRP-GRGXGAXXXGAXPRXXFXGKAXXRGXXXTPAPXRXXXXP--RNP 553
AG G G P P G G G R G RG P P
Sbjct: 141 AGPPGAVGGPGPKGPPGPPGGPGELGGPGRGGNRGPPGPRGPPGEAGPDGEGGRPGQAGQ 200
Query: 552 TDPAQPSPGXXGGKGXPXXNRPPPAGGXXLXVRQNXSPRPP 430
T A PG G G P P G +N P PP
Sbjct: 201 TRSAPSPPGQPGQPGEPGSPGEPGPDGRAGHPGRNGPPGPP 241
>Z22964-2|CAA80537.1| 1759|Caenorhabditis elegans a2(IV) collagen
protein.
Length = 1759
Score = 36.3 bits (80), Expect = 0.032
Identities = 28/83 (33%), Positives = 31/83 (37%), Gaps = 1/83 (1%)
Frame = -3
Query: 753 RXGXDFXSXXAGRGGXXGXXQPNRPGRGXGAXXXGAXPRXXFXGKAXXRGXXXTPAPXRX 574
+ G D G G G QP +PG GA G P G +G PAP
Sbjct: 666 KPGQDGLPGLPGNKGEAGYGQPGQPG-FPGAKGDGGLP--GLPGTPGLQGMPGEPAPENQ 722
Query: 573 XXXPRNPTDPAQPS-PGXXGGKG 508
NP P QP PG G KG
Sbjct: 723 V----NPAPPGQPGLPGLPGTKG 741
Score = 30.3 bits (65), Expect = 2.1
Identities = 30/119 (25%), Positives = 34/119 (28%), Gaps = 1/119 (0%)
Frame = +2
Query: 425 PXGGRGEXFCLTXRXXPPAGGGRLXXGXPFPPXXPGLGWAGSVGLRGXXXXRXGAGVXXX 604
P G +G+ + P GG G P PP P GW G G G G
Sbjct: 85 PVGIKGDRGAVGVPGFPGNDGGNGRPGEPGPPGAP--GWDGCNGTDGAPGIPGRPGPPGM 142
Query: 605 PRXXAXPXKXXLGXAPXXXAPXPRPGRXG-WXXPXXPPRPAXXXXKSXPXRGGGXXNGG 778
P P L P PG G P P P P G + G
Sbjct: 143 PGFPGPPGMDGLKGEPAIGYAG-APGEKGDGGMPGMPGLPGPSGRDGYPGEKGDRGDTG 200
>Z22964-1|CAA80536.1| 1758|Caenorhabditis elegans a2(IV) collagen
protein.
Length = 1758
Score = 36.3 bits (80), Expect = 0.032
Identities = 28/83 (33%), Positives = 31/83 (37%), Gaps = 1/83 (1%)
Frame = -3
Query: 753 RXGXDFXSXXAGRGGXXGXXQPNRPGRGXGAXXXGAXPRXXFXGKAXXRGXXXTPAPXRX 574
+ G D G G G QP +PG GA G P G +G PAP
Sbjct: 665 KPGQDGLPGLPGNKGEAGYGQPGQPG-FPGAKGDGGLP--GLPGTPGLQGMPGEPAPENQ 721
Query: 573 XXXPRNPTDPAQPS-PGXXGGKG 508
NP P QP PG G KG
Sbjct: 722 V----NPAPPGQPGLPGLPGTKG 740
Score = 30.3 bits (65), Expect = 2.1
Identities = 30/119 (25%), Positives = 34/119 (28%), Gaps = 1/119 (0%)
Frame = +2
Query: 425 PXGGRGEXFCLTXRXXPPAGGGRLXXGXPFPPXXPGLGWAGSVGLRGXXXXRXGAGVXXX 604
P G +G+ + P GG G P PP P GW G G G G
Sbjct: 85 PVGIKGDRGAVGVPGFPGNDGGNGRPGEPGPPGAP--GWDGCNGTDGAPGIPGRPGPPGM 142
Query: 605 PRXXAXPXKXXLGXAPXXXAPXPRPGRXG-WXXPXXPPRPAXXXXKSXPXRGGGXXNGG 778
P P L P PG G P P P P G + G
Sbjct: 143 PGFPGPPGMDGLKGEPAIGYAG-APGEKGDGGMPGMPGLPGPSGRDGYPGEKGDRGDTG 200
>U53342-4|AAA96216.1| 1758|Caenorhabditis elegans Lethal protein 2,
isoform a protein.
Length = 1758
Score = 36.3 bits (80), Expect = 0.032
Identities = 28/83 (33%), Positives = 31/83 (37%), Gaps = 1/83 (1%)
Frame = -3
Query: 753 RXGXDFXSXXAGRGGXXGXXQPNRPGRGXGAXXXGAXPRXXFXGKAXXRGXXXTPAPXRX 574
+ G D G G G QP +PG GA G P G +G PAP
Sbjct: 665 KPGQDGLPGLPGNKGEAGYGQPGQPG-FPGAKGDGGLP--GLPGTPGLQGMPGEPAPENQ 721
Query: 573 XXXPRNPTDPAQPS-PGXXGGKG 508
NP P QP PG G KG
Sbjct: 722 V----NPAPPGQPGLPGLPGTKG 740
Score = 30.3 bits (65), Expect = 2.1
Identities = 30/119 (25%), Positives = 34/119 (28%), Gaps = 1/119 (0%)
Frame = +2
Query: 425 PXGGRGEXFCLTXRXXPPAGGGRLXXGXPFPPXXPGLGWAGSVGLRGXXXXRXGAGVXXX 604
P G +G+ + P GG G P PP P GW G G G G
Sbjct: 85 PVGIKGDRGAVGVPGFPGNDGGNGRPGEPGPPGAP--GWDGCNGTDGAPGIPGRPGPPGM 142
Query: 605 PRXXAXPXKXXLGXAPXXXAPXPRPGRXG-WXXPXXPPRPAXXXXKSXPXRGGGXXNGG 778
P P L P PG G P P P P G + G
Sbjct: 143 PGFPGPPGMDGLKGEPAIGYAG-APGEKGDGGMPGMPGLPGPSGRDGYPGEKGDRGDTG 200
>U53342-3|AAA96215.1| 1759|Caenorhabditis elegans Lethal protein 2,
isoform b protein.
Length = 1759
Score = 36.3 bits (80), Expect = 0.032
Identities = 28/83 (33%), Positives = 31/83 (37%), Gaps = 1/83 (1%)
Frame = -3
Query: 753 RXGXDFXSXXAGRGGXXGXXQPNRPGRGXGAXXXGAXPRXXFXGKAXXRGXXXTPAPXRX 574
+ G D G G G QP +PG GA G P G +G PAP
Sbjct: 666 KPGQDGLPGLPGNKGEAGYGQPGQPG-FPGAKGDGGLP--GLPGTPGLQGMPGEPAPENQ 722
Query: 573 XXXPRNPTDPAQPS-PGXXGGKG 508
NP P QP PG G KG
Sbjct: 723 V----NPAPPGQPGLPGLPGTKG 741
Score = 30.3 bits (65), Expect = 2.1
Identities = 30/119 (25%), Positives = 34/119 (28%), Gaps = 1/119 (0%)
Frame = +2
Query: 425 PXGGRGEXFCLTXRXXPPAGGGRLXXGXPFPPXXPGLGWAGSVGLRGXXXXRXGAGVXXX 604
P G +G+ + P GG G P PP P GW G G G G
Sbjct: 85 PVGIKGDRGAVGVPGFPGNDGGNGRPGEPGPPGAP--GWDGCNGTDGAPGIPGRPGPPGM 142
Query: 605 PRXXAXPXKXXLGXAPXXXAPXPRPGRXG-WXXPXXPPRPAXXXXKSXPXRGGGXXNGG 778
P P L P PG G P P P P G + G
Sbjct: 143 PGFPGPPGMDGLKGEPAIGYAG-APGEKGDGGMPGMPGLPGPSGRDGYPGEKGDRGDTG 200
>U22327-1|AAA64312.1| 1795|Caenorhabditis elegans alpha2(IV)
collagen protein.
Length = 1795
Score = 36.3 bits (80), Expect = 0.032
Identities = 28/83 (33%), Positives = 31/83 (37%), Gaps = 1/83 (1%)
Frame = -3
Query: 753 RXGXDFXSXXAGRGGXXGXXQPNRPGRGXGAXXXGAXPRXXFXGKAXXRGXXXTPAPXRX 574
+ G D G G G QP +PG GA G P G +G PAP
Sbjct: 702 KPGQDGLPGLPGNKGEAGYGQPGQPG-FPGAKGDGGLP--GLPGTPGLQGMPGEPAPENQ 758
Query: 573 XXXPRNPTDPAQPS-PGXXGGKG 508
NP P QP PG G KG
Sbjct: 759 V----NPAPPGQPGLPGLPGTKG 777
Score = 30.3 bits (65), Expect = 2.1
Identities = 30/119 (25%), Positives = 34/119 (28%), Gaps = 1/119 (0%)
Frame = +2
Query: 425 PXGGRGEXFCLTXRXXPPAGGGRLXXGXPFPPXXPGLGWAGSVGLRGXXXXRXGAGVXXX 604
P G +G+ + P GG G P PP P GW G G G G
Sbjct: 85 PVGIKGDRGAVGVPGFPGNDGGNGRPGEPGPPGAP--GWDGCNGTDGAPGIPGRPGPPGM 142
Query: 605 PRXXAXPXKXXLGXAPXXXAPXPRPGRXG-WXXPXXPPRPAXXXXKSXPXRGGGXXNGG 778
P P L P PG G P P P P G + G
Sbjct: 143 PGFPGPPGMDGLKGEPAIGYAG-APGEKGDGGMPGMPGLPGPSGRDGYPGEKGDRGDTG 200
>Z67990-1|CAA91932.1| 316|Caenorhabditis elegans Hypothetical
protein F02D10.1 protein.
Length = 316
Score = 35.1 bits (77), Expect = 0.075
Identities = 33/127 (25%), Positives = 35/127 (27%)
Frame = -1
Query: 956 PGXPPPPAGXXGGXGGPXXRGRXXXXXRTGXXXXXXXXXXXGXXXXXXXXRGXGXSVFXP 777
P PP P G G GGP G G G G G
Sbjct: 169 PPGPPGPDGTPGEPGGPGPAGSPAGPSGPGPAGPPGPAGPPGNDGQPGQPGGPGQD---G 225
Query: 776 LRXXXPHXGXGPTXXXXGPGGGAXXXEXNXTAPAXGXGPXXXAPGPEXXSGXRXRXGGXA 597
G GP GP G A + + A G GP PGP G G
Sbjct: 226 ASSAGGEAGPGPA-GPPGPAGPAGPDGQSGSGSAGGPGP-KGPPGPAGQPGSDGNPGTAG 283
Query: 596 XPPPPXG 576
P P G
Sbjct: 284 PPGNPGG 290
>U40187-2|AAA81159.1| 282|Caenorhabditis elegans Collagen protein 8
protein.
Length = 282
Score = 35.1 bits (77), Expect = 0.075
Identities = 35/131 (26%), Positives = 37/131 (28%), Gaps = 4/131 (3%)
Frame = -1
Query: 956 PGXPPPPAGXXGGXGGPXXRGRXXXXXRTGXXXXXXXXXXXGXXXXXXXXRGX-GXS-VF 783
P PP P G G G P G G G G G S +
Sbjct: 93 PAGPPGPPGEGGQSGEPGHDGDDGKPGAPGVIVAITHDIPGGCIKCPPGRPGPRGPSGLV 152
Query: 782 XPLRXXXPHXGXGPTXXXXGPGGGAXXXEXNXTAPAXGXGPXXXAPGPEXXSGXRXRXG- 606
P GP G GG + A GP PGP G R G
Sbjct: 153 GPAGPAGDQGRHGPPGPTGGQGGPGEQGDAGRPGAAGRPGP----PGPRGEPGTEYRPGQ 208
Query: 605 -GXAXPPPPXG 576
G A PP P G
Sbjct: 209 AGRAGPPGPRG 219
>M25479-1|AAA27993.1| 282|Caenorhabditis elegans collagen protein.
Length = 282
Score = 34.7 bits (76), Expect = 0.099
Identities = 35/131 (26%), Positives = 37/131 (28%), Gaps = 4/131 (3%)
Frame = -1
Query: 956 PGXPPPPAGXXGGXGGPXXRGRXXXXXRTGXXXXXXXXXXXGXXXXXXXXRGX-GXS-VF 783
P PP P G G G P G G G G G S +
Sbjct: 93 PAGPPGPPGEGGQSGEPGHDGDDGKPGAPGVIVAITHDIPGGCIKCPPGCPGPRGPSGLV 152
Query: 782 XPLRXXXPHXGXGPTXXXXGPGGGAXXXEXNXTAPAXGXGPXXXAPGPEXXSGXRXRXG- 606
P GP G GG + A GP PGP G R G
Sbjct: 153 GPAGPAGDQGRHGPPGPTGGQGGPGEQGDAGRPGAAGCPGP----PGPRGEPGTEYRPGQ 208
Query: 605 -GXAXPPPPXG 576
G A PP P G
Sbjct: 209 AGRAGPPGPRG 219
>AF000198-8|AAP68908.1| 435|Caenorhabditis elegans Collagen protein
51 protein.
Length = 435
Score = 34.7 bits (76), Expect = 0.099
Identities = 32/110 (29%), Positives = 35/110 (31%), Gaps = 4/110 (3%)
Frame = -3
Query: 789 CFXSPPXXXPPPRXGXDFXSXXAGRGGXXGXX-QPNRPGRGXGAXXXGAXPRXXFX--GK 619
C PP PP G D AG+ G G Q + G A P G
Sbjct: 134 CPAGPPG--PPGEAGTDGEPGQAGQDGQPGQAGQADSGSSGQACITCPAGPPGPPGPDGN 191
Query: 618 AXXRGXXXTPAPXRXXXXPRNPTDPAQPS-PGXXGGKGXPXXNRPPPAGG 472
A G P P P P P P PG G G P + P A G
Sbjct: 192 AGPAGAPGVPGPDGDAGSPPPPGPPGPPGPPGNDGQPGAPGQDGQPGAPG 241
Score = 28.7 bits (61), Expect = 6.5
Identities = 24/96 (25%), Positives = 27/96 (28%), Gaps = 1/96 (1%)
Frame = +2
Query: 515 PPXXPGL-GWAGSVGLRGXXXXRXGAGVXXXPRXXAXPXKXXLGXAPXXXAPXPRPGRXG 691
PP PG G AG G G AG P P P +PG G
Sbjct: 182 PPGPPGPDGNAGPAGAPGVPGPDGDAGSPPPPGPPGPPGPPGNDGQPGAPGQDGQPGAPG 241
Query: 692 WXXPXXPPRPAXXXXKSXPXRGGGXXNGGXXKHSXP 799
P P P G +GG + P
Sbjct: 242 TNTVNSPGGPGPAGPPGPPGPPGQDGSGGAAQPGPP 277
>Z49938-3|CAA90188.1| 306|Caenorhabditis elegans Hypothetical
protein F38A3.2 protein.
Length = 306
Score = 34.3 bits (75), Expect = 0.13
Identities = 27/98 (27%), Positives = 30/98 (30%), Gaps = 2/98 (2%)
Frame = -3
Query: 789 CFXSPPXXXPPPRXGXDFXSXXAGRGGXXGXXQPNRPGRGXGAXXXGAXPRXXFXGKAXX 610
CF P PP G +G G G QP PG A GA G+
Sbjct: 159 CFDCPAG--PPGPAGNPGPKGPSGNAGADG--QPGAPGNAGAAGAPGAPGPAGPDGQPGS 214
Query: 609 RGXXXTPAPXRXXXXPRNPTDPAQP--SPGXXGGKGXP 502
G P P P P +PG G G P
Sbjct: 215 TGQDGAPGVVEEVAVPAGPAGAPGPAGAPGADGAAGAP 252
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 33.9 bits (74), Expect = 0.17
Identities = 35/125 (28%), Positives = 39/125 (31%)
Frame = +2
Query: 389 GSXXGFXSMXXXPXGGRGEXFCLTXRXXPPAGGGRLXXGXPFPPXXPGLGWAGSVGLRGX 568
G GF G RG+ R PPAG P PP AGS G
Sbjct: 210 GQQQGFGQQQQTQNGFRGK------RQAPPAGSP-----PPPPPPKGSPPLAGS----GS 254
Query: 569 XXXRXGAGVXXXPRXXAXPXKXXLGXAPXXXAPXPRPGRXGWXXPXXPPRPAXXXXKSXP 748
AG PR + P P P P R G P PPR + P
Sbjct: 255 PPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPPPPPPRGSPPTGSLPP 314
Query: 749 XRGGG 763
+ GG
Sbjct: 315 PQAGG 319
Score = 29.5 bits (63), Expect = 3.7
Identities = 24/89 (26%), Positives = 25/89 (28%)
Frame = -3
Query: 555 PTDPAQPSPGXXGGKGXPXXNRPPPAGGXXLXVRQNXSPRPPXGXXXMEXXPXXDPXXXX 376
P P + SP G P PPPA G R P PP G P
Sbjct: 239 PPPPPKGSPPLAGSGSPP----PPPAAGSPPPPRTGSPPPPPTGSPP-PPPAGGSPPPPR 293
Query: 375 XXXXXXGPXPRXMPLXXHXXRAMXGGGGP 289
P PR P GG P
Sbjct: 294 AGSPPPPPPPRGSPPTGSLPPPQAGGSPP 322
Score = 28.3 bits (60), Expect = 8.6
Identities = 26/113 (23%), Positives = 30/113 (26%)
Frame = -3
Query: 762 PPPRXGXDFXSXXAGRGGXXGXXQPNRPGRGXGAXXXGAXPRXXFXGKAXXRGXXXTPAP 583
PPP G G P P G+ G+ P G G P P
Sbjct: 273 PPPPTGSPPPPPAGGSPPPPRAGSPPPPPPPRGSPPTGSLPPPQAGGSPPPAGTGSPPPP 332
Query: 582 XRXXXXPRNPTDPAQPSPGXXGGKGXPXXNRPPPAGGXXLXVRQNXSPRPPXG 424
R + P P G P RPP G + S P G
Sbjct: 333 PRQKRQAPERSPPTGSPP-----TGSPPTGRPPRGGPGKSSEESSESREGPRG 380
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 33.9 bits (74), Expect = 0.17
Identities = 35/125 (28%), Positives = 39/125 (31%)
Frame = +2
Query: 389 GSXXGFXSMXXXPXGGRGEXFCLTXRXXPPAGGGRLXXGXPFPPXXPGLGWAGSVGLRGX 568
G GF G RG+ R PPAG P PP AGS G
Sbjct: 231 GQQQGFGQQQQTQNGFRGK------RQAPPAGSP-----PPPPPPKGSPPLAGS----GS 275
Query: 569 XXXRXGAGVXXXPRXXAXPXKXXLGXAPXXXAPXPRPGRXGWXXPXXPPRPAXXXXKSXP 748
AG PR + P P P P R G P PPR + P
Sbjct: 276 PPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPPPPPPRGSPPTGSLPP 335
Query: 749 XRGGG 763
+ GG
Sbjct: 336 PQAGG 340
Score = 29.5 bits (63), Expect = 3.7
Identities = 24/89 (26%), Positives = 25/89 (28%)
Frame = -3
Query: 555 PTDPAQPSPGXXGGKGXPXXNRPPPAGGXXLXVRQNXSPRPPXGXXXMEXXPXXDPXXXX 376
P P + SP G P PPPA G R P PP G P
Sbjct: 260 PPPPPKGSPPLAGSGSPP----PPPAAGSPPPPRTGSPPPPPTGSPP-PPPAGGSPPPPR 314
Query: 375 XXXXXXGPXPRXMPLXXHXXRAMXGGGGP 289
P PR P GG P
Sbjct: 315 AGSPPPPPPPRGSPPTGSLPPPQAGGSPP 343
Score = 28.3 bits (60), Expect = 8.6
Identities = 26/113 (23%), Positives = 30/113 (26%)
Frame = -3
Query: 762 PPPRXGXDFXSXXAGRGGXXGXXQPNRPGRGXGAXXXGAXPRXXFXGKAXXRGXXXTPAP 583
PPP G G P P G+ G+ P G G P P
Sbjct: 294 PPPPTGSPPPPPAGGSPPPPRAGSPPPPPPPRGSPPTGSLPPPQAGGSPPPAGTGSPPPP 353
Query: 582 XRXXXXPRNPTDPAQPSPGXXGGKGXPXXNRPPPAGGXXLXVRQNXSPRPPXG 424
R + P P G P RPP G + S P G
Sbjct: 354 PRQKRQAPERSPPTGSPP-----TGSPPTGRPPRGGPGKSSEESSESREGPRG 401
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 33.9 bits (74), Expect = 0.17
Identities = 35/125 (28%), Positives = 39/125 (31%)
Frame = +2
Query: 389 GSXXGFXSMXXXPXGGRGEXFCLTXRXXPPAGGGRLXXGXPFPPXXPGLGWAGSVGLRGX 568
G GF G RG+ R PPAG P PP AGS G
Sbjct: 216 GQQQGFGQQQQTQNGFRGK------RQAPPAGSP-----PPPPPPKGSPPLAGS----GS 260
Query: 569 XXXRXGAGVXXXPRXXAXPXKXXLGXAPXXXAPXPRPGRXGWXXPXXPPRPAXXXXKSXP 748
AG PR + P P P P R G P PPR + P
Sbjct: 261 PPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPPPPPPRGSPPTGSLPP 320
Query: 749 XRGGG 763
+ GG
Sbjct: 321 PQAGG 325
Score = 29.5 bits (63), Expect = 3.7
Identities = 24/89 (26%), Positives = 25/89 (28%)
Frame = -3
Query: 555 PTDPAQPSPGXXGGKGXPXXNRPPPAGGXXLXVRQNXSPRPPXGXXXMEXXPXXDPXXXX 376
P P + SP G P PPPA G R P PP G P
Sbjct: 245 PPPPPKGSPPLAGSGSPP----PPPAAGSPPPPRTGSPPPPPTGSPP-PPPAGGSPPPPR 299
Query: 375 XXXXXXGPXPRXMPLXXHXXRAMXGGGGP 289
P PR P GG P
Sbjct: 300 AGSPPPPPPPRGSPPTGSLPPPQAGGSPP 328
Score = 28.3 bits (60), Expect = 8.6
Identities = 26/113 (23%), Positives = 30/113 (26%)
Frame = -3
Query: 762 PPPRXGXDFXSXXAGRGGXXGXXQPNRPGRGXGAXXXGAXPRXXFXGKAXXRGXXXTPAP 583
PPP G G P P G+ G+ P G G P P
Sbjct: 279 PPPPTGSPPPPPAGGSPPPPRAGSPPPPPPPRGSPPTGSLPPPQAGGSPPPAGTGSPPPP 338
Query: 582 XRXXXXPRNPTDPAQPSPGXXGGKGXPXXNRPPPAGGXXLXVRQNXSPRPPXG 424
R + P P G P RPP G + S P G
Sbjct: 339 PRQKRQAPERSPPTGSPP-----TGSPPTGRPPRGGPGKSSEESSESREGPRG 386
>AL033536-4|CAA22144.2| 1582|Caenorhabditis elegans Hypothetical
protein Y53C10A.10 protein.
Length = 1582
Score = 32.3 bits (70), Expect = 0.53
Identities = 18/57 (31%), Positives = 22/57 (38%), Gaps = 3/57 (5%)
Frame = -3
Query: 591 PAPXRXXXXPRNPTDPAQPSPGXX---GGKGXPXXNRPPPAGGXXLXVRQNXSPRPP 430
P P P P+DP +PSP G G N+P P+G SP P
Sbjct: 940 PGPGPGPPSPNGPSDPNKPSPNGPSPNGPNGPSDPNKPGPSGPNGPSDPNKPSPNGP 996
Score = 32.3 bits (70), Expect = 0.53
Identities = 25/99 (25%), Positives = 30/99 (30%)
Frame = -3
Query: 720 GRGGXXGXXQPNRPGRGXGAXXXGAXPRXXFXGKAXXRGXXXTPAPXRXXXXPRNPTDPA 541
G G G PN+PG + P P P P P+DP
Sbjct: 1057 GPNGPNGPSDPNKPG--PNGPNEPSDPNKPGPNGPNGPSDPNKPGPN----GPNEPSDPN 1110
Query: 540 QPSPGXXGGKGXPXXNRPPPAGGXXLXVRQNXSPRPPXG 424
+P P G P N+P P G P P G
Sbjct: 1111 KPGPNGPNGPSDP--NKPGPNGPNEPSDPNKPGPNGPNG 1147
Score = 32.3 bits (70), Expect = 0.53
Identities = 35/157 (22%), Positives = 42/157 (26%)
Frame = -3
Query: 720 GRGGXXGXXQPNRPGRGXGAXXXGAXPRXXFXGKAXXRGXXXTPAPXRXXXXPRNPTDPA 541
G G G PN+PG + P P P P P+DP
Sbjct: 1155 GPNGPNGPSDPNKPG--PNGPNESSDPNKPGPNGPNEPSDPNKPGPN----GPNGPSDPN 1208
Query: 540 QPSPGXXGGKGXPXXNRPPPAGGXXLXVRQNXSPRPPXGXXXMEXXPXXDPXXXXXXXXX 361
+P P P N+P P G P P G P
Sbjct: 1209 KPGPNGPNEPSDP--NKPGPNGSNGPSDPNKPGPNGPNGPSDPNKPGPNGPNEPSDPNRP 1266
Query: 360 XGPXPRXMPLXXHXXRAMXGGGGPXQAWXPXPSGXXG 250
P PL + G GP P P+G G
Sbjct: 1267 GPNGPNG-PLDPNKP-GPNGPNGPSDPNKPGPNGPNG 1301
Score = 32.3 bits (70), Expect = 0.53
Identities = 25/99 (25%), Positives = 30/99 (30%)
Frame = -3
Query: 720 GRGGXXGXXQPNRPGRGXGAXXXGAXPRXXFXGKAXXRGXXXTPAPXRXXXXPRNPTDPA 541
G G G PN+PG + P P P P P+DP
Sbjct: 1281 GPNGPNGPSDPNKPG--PNGPNGPSDPNKPGPNGPNEPSDPNKPGPN----GPNGPSDPN 1334
Query: 540 QPSPGXXGGKGXPXXNRPPPAGGXXLXVRQNXSPRPPXG 424
+P P G P N+P P G P P G
Sbjct: 1335 KPGPNGPNGPSDP--NKPGPNGPNEPSDPNKPGPNGPNG 1371
Score = 31.5 bits (68), Expect = 0.92
Identities = 22/82 (26%), Positives = 27/82 (32%)
Frame = -3
Query: 720 GRGGXXGXXQPNRPGRGXGAXXXGAXPRXXFXGKAXXRGXXXTPAPXRXXXXPRNPTDPA 541
G G G PN+PG + P P P P P+DP
Sbjct: 1141 GPNGPNGPSDPNKPG--PNGPNGPSDPNKPGPNGPNESSDPNKPGPN----GPNEPSDPN 1194
Query: 540 QPSPGXXGGKGXPXXNRPPPAG 475
+P P G P N+P P G
Sbjct: 1195 KPGPNGPNGPSDP--NKPGPNG 1214
Score = 31.1 bits (67), Expect = 1.2
Identities = 22/82 (26%), Positives = 27/82 (32%)
Frame = -3
Query: 720 GRGGXXGXXQPNRPGRGXGAXXXGAXPRXXFXGKAXXRGXXXTPAPXRXXXXPRNPTDPA 541
G G G PN+PG + P P P P P+DP
Sbjct: 1085 GPNGPNGPSDPNKPG--PNGPNEPSDPNKPGPNGPNGPSDPNKPGPN----GPNEPSDPN 1138
Query: 540 QPSPGXXGGKGXPXXNRPPPAG 475
+P P G P N+P P G
Sbjct: 1139 KPGPNGPNGPSDP--NKPGPNG 1158
Score = 31.1 bits (67), Expect = 1.2
Identities = 22/82 (26%), Positives = 27/82 (32%)
Frame = -3
Query: 720 GRGGXXGXXQPNRPGRGXGAXXXGAXPRXXFXGKAXXRGXXXTPAPXRXXXXPRNPTDPA 541
G G G PN+PG + P P P P P+DP
Sbjct: 1267 GPNGPNGPLDPNKPG--PNGPNGPSDPNKPGPNGPNGPSDPNKPGPN----GPNEPSDPN 1320
Query: 540 QPSPGXXGGKGXPXXNRPPPAG 475
+P P G P N+P P G
Sbjct: 1321 KPGPNGPNGPSDP--NKPGPNG 1340
Score = 29.9 bits (64), Expect = 2.8
Identities = 15/47 (31%), Positives = 18/47 (38%)
Frame = -3
Query: 564 PRNPTDPAQPSPGXXGGKGXPXXNRPPPAGGXXLXVRQNXSPRPPXG 424
P P+DP +P P G P N+P P G P P G
Sbjct: 1047 PNGPSDPNKPGPNGPNGPSDP--NKPGPNGPNEPSDPNKPGPNGPNG 1091
Score = 29.1 bits (62), Expect = 4.9
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = -3
Query: 564 PRNPTDPAQPSPGXXGGKGXPXXNRPPPAG 475
P P+DP +P P G P N+P P G
Sbjct: 1355 PNEPSDPNKPGPNGPNGSSDP--NKPGPNG 1382
>Z68507-1|CAA92826.1| 337|Caenorhabditis elegans Hypothetical
protein M18.1 protein.
Length = 337
Score = 31.5 bits (68), Expect = 0.92
Identities = 27/86 (31%), Positives = 27/86 (31%), Gaps = 3/86 (3%)
Frame = -3
Query: 720 GRGGXXGXXQPNRPGRGXGAXXXGAXPRXXFX--GKAXXRGXXXTPAPXRXXXXPRNPTD 547
G G G QP RPG GA G A G P P N
Sbjct: 180 GPAGDNG--QPGRPGNDGRPGAPGAPGTRSVGRPGTAGSPGPQGPPGQNGNDGQPGNDGA 237
Query: 546 PAQP-SPGXXGGKGXPXXNRPPPAGG 472
P QP PG G G P PP G
Sbjct: 238 PGQPGQPGPDGHPGQPGNAGPPGTPG 263
>U80451-8|AAB37842.2| 288|Caenorhabditis elegans Collagen protein
20 protein.
Length = 288
Score = 31.5 bits (68), Expect = 0.92
Identities = 31/103 (30%), Positives = 35/103 (33%), Gaps = 2/103 (1%)
Frame = -3
Query: 777 PPXXXPPPRXGXDFXSXXAGRGGXXGXXQPNRPGRGXGAXXXGAXPRXXFXGKAXXRGXX 598
P PP G AGRGG G P P +G GA G G
Sbjct: 155 PGPKGPPGPPGGHGEPGPAGRGGPRGPPGPGGP-QGEAGEDGGA-------GNPGTPGQV 206
Query: 597 XT-PAPXRXXXXPRNPTDPAQPSPGXXGGKGXPXXNRPP-PAG 475
+ P+P P P P + PG G G P PP P G
Sbjct: 207 RSLPSPPGEPGQPGEPGGPGE--PGADGRPGHPGRAGPPGPPG 247
Score = 28.7 bits (61), Expect = 6.5
Identities = 16/37 (43%), Positives = 16/37 (43%), Gaps = 2/37 (5%)
Frame = -2
Query: 559 QPNRPG-PAESGXXGREG-XAXXQPPPPXGGXXPXSE 455
QP PG P E G GR G PP P G P E
Sbjct: 218 QPGEPGGPGEPGADGRPGHPGRAGPPGPPGDNGPNGE 254
Score = 28.3 bits (60), Expect = 8.6
Identities = 23/82 (28%), Positives = 26/82 (31%)
Frame = -1
Query: 779 PLRXXXPHXGXGPTXXXXGPGGGAXXXEXNXTAPAXGXGPXXXAPGPEXXSGXRXRXGGX 600
P+ P G GP PGG PA GP PGP G GG
Sbjct: 145 PVGPAGPAGGPGPKGPPGPPGG------HGEPGPAGRGGP-RGPPGPGGPQGEAGEDGGA 197
Query: 599 AXPPPPXGXXXXXATQPTRPSR 534
P P G + P P +
Sbjct: 198 GNPGTP-GQVRSLPSPPGEPGQ 218
>Z46791-4|CAA86758.1| 317|Caenorhabditis elegans Hypothetical
protein C09G5.5 protein.
Length = 317
Score = 31.1 bits (67), Expect = 1.2
Identities = 23/83 (27%), Positives = 24/83 (28%)
Frame = -3
Query: 720 GRGGXXGXXQPNRPGRGXGAXXXGAXPRXXFXGKAXXRGXXXTPAPXRXXXXPRNPTDPA 541
G G G P P GA G G G +P P P
Sbjct: 140 GPAGAPGNPGPQGPNGNPGAPAHGGGQGPP--GPPGPAGDAGSPGQAGAPGNPGRPGQSG 197
Query: 540 QPSPGXXGGKGXPXXNRPPPAGG 472
Q S G G G P PP A G
Sbjct: 198 QRSRGLPGPSGRPGPQGPPGAPG 220
Score = 29.5 bits (63), Expect = 3.7
Identities = 22/82 (26%), Positives = 24/82 (29%), Gaps = 1/82 (1%)
Frame = -3
Query: 720 GRGGXXGXXQPNRPGRGXGAXXXGAXPRXXFXGKAXXRGXXXTPAPXRXXXXPRNPTDPA 541
GR G G PG G G G P P P +P
Sbjct: 191 GRPGQSGQRSRGLPGPSGRPGPQGPPGAPGQPGSGSTPGPAGPPGPPGPNGQPGHPGQDG 250
Query: 540 QP-SPGXXGGKGXPXXNRPPPA 478
QP +PG G G P PA
Sbjct: 251 QPGAPGNDGAPGSDAAYCPCPA 272
>V00147-1|CAA23463.1| 296|Caenorhabditis elegans protein (
Caenorhabditis elegansgene Col-1 coding for a collagen.
).
Length = 296
Score = 31.1 bits (67), Expect = 1.2
Identities = 26/95 (27%), Positives = 29/95 (30%), Gaps = 1/95 (1%)
Frame = -3
Query: 711 GXXGXXQPNRPGRGXGAXXXGAXPRXXFXGKAXXRGXXXTPAPXRXXXXPRNPTDPAQPS 532
G G P P GA P + G P P P P
Sbjct: 178 GSPGPRGPPGPAGEAGAPGPAGEPGTPAISEPLTPGAPGEPGDSGPPGPPGPPGAPGNDG 237
Query: 531 P-GXXGGKGXPXXNRPPPAGGXXLXVRQNXSPRPP 430
P G G KG P + PP A G Q+ P PP
Sbjct: 238 PPGPPGPKGAPGPDGPPGADG------QSGPPGPP 266
>J01047-1|AAA27988.1| 296|Caenorhabditis elegans protein (
C.elegans (nematode)collagen 1 (col-1) gene, complete
cds. ).
Length = 296
Score = 31.1 bits (67), Expect = 1.2
Identities = 26/95 (27%), Positives = 29/95 (30%), Gaps = 1/95 (1%)
Frame = -3
Query: 711 GXXGXXQPNRPGRGXGAXXXGAXPRXXFXGKAXXRGXXXTPAPXRXXXXPRNPTDPAQPS 532
G G P P GA P + G P P P P
Sbjct: 178 GSPGPRGPPGPAGEAGAPGPAGEPGTPAISEPLTPGAPGEPGDSGPPGPPGPPGAPGNDG 237
Query: 531 P-GXXGGKGXPXXNRPPPAGGXXLXVRQNXSPRPP 430
P G G KG P + PP A G Q+ P PP
Sbjct: 238 PPGPPGPKGAPGPDGPPGADG------QSGPPGPP 266
>AC084197-24|AAM44390.1| 297|Caenorhabditis elegans Collagen
protein 112 protein.
Length = 297
Score = 31.1 bits (67), Expect = 1.2
Identities = 26/85 (30%), Positives = 26/85 (30%), Gaps = 2/85 (2%)
Frame = -3
Query: 720 GRGGXXGXXQ-PNRPGRGXGAXXXGAXPRXXFXGKAXXRGXXXTPAPXRXXXXPRNPTDP 544
GR G G P PGR A P G P P P P
Sbjct: 113 GRPGKPGVAGLPGNPGRPPQAPCDPITPPPCKPCPQGPPGVQGPPGPAGDAGLDGQPGGP 172
Query: 543 AQPS-PGXXGGKGXPXXNRPPPAGG 472
Q PG G KG P N P A G
Sbjct: 173 GQDGQPGQPGPKGPPGVNGQPGAPG 197
>Z68113-3|CAA92150.1| 333|Caenorhabditis elegans Hypothetical
protein E03G2.4 protein.
Length = 333
Score = 30.7 bits (66), Expect = 1.6
Identities = 28/96 (29%), Positives = 35/96 (36%), Gaps = 2/96 (2%)
Frame = -3
Query: 756 PRXGXDFXSXXAGRGGXXGXXQ--PNRPGRGXGAXXXGAXPRXXFXGKAXXRGXXXTPAP 583
P G ++ S G GG G Q P PGR G+ G+ TPAP
Sbjct: 123 PVYGNNYGSQGGG-GGCCGCGQSPPGPPGRPGSDGSPGSDGEAGIPGRDGPDAPRATPAP 181
Query: 582 XRXXXXPRNPTDPAQPSPGXXGGKGXPXXNRPPPAG 475
P +P + G G KG P RP +G
Sbjct: 182 NFDWCFDCPPGEPGR--QGKQGRKGPP--GRPGGSG 213
>U55366-4|AAA97982.1| 310|Caenorhabditis elegans Collagen protein
139 protein.
Length = 310
Score = 30.7 bits (66), Expect = 1.6
Identities = 26/103 (25%), Positives = 35/103 (33%), Gaps = 2/103 (1%)
Frame = -3
Query: 774 PXXXPPPRXGXDFXSXXAGRGGXXGXX-QPNRPGRGXGAXXXGAXPRXXFXGKAXXRGXX 598
P PP + + G G G +P PG G G+ GA G G
Sbjct: 149 PVTVPPCKPCPPGPAGEPGHDGAPGAPGKPGAPGVGGGSGAPGAPGPKGAPGGPGQPGRD 208
Query: 597 XTPAPXRXXXXPRNPTDPAQPSP-GXXGGKGXPXXNRPPPAGG 472
P + + ++P QP P G G +G P P G
Sbjct: 209 GQPG--QAGQPGSSSSEPGQPGPNGQPGPRGPPGQAGSPGGNG 249
>AF036699-4|AAB88358.1| 281|Caenorhabditis elegans Collagen protein
104 protein.
Length = 281
Score = 30.7 bits (66), Expect = 1.6
Identities = 28/110 (25%), Positives = 30/110 (27%), Gaps = 8/110 (7%)
Frame = -3
Query: 777 PPXXXPPPRXGXDFXSXXAGRGGXXGXX-QPNRPGRGXGAXXXGAXPRXXFXGKAXXRGX 601
P PP G G G G P PG G G G+ G
Sbjct: 144 PGPAGPPGAPGDKGNDGAPGLRGPDGHPGHPGNPGYGGEPGAPGNNGEPGDKGRDGSHGT 203
Query: 600 XXTPAPXRXXXXPRNPTDPAQPS-------PGXXGGKGXPXXNRPPPAGG 472
P P P P QP PG G G P + P A G
Sbjct: 204 KGAPGPQGPSGPVGQPGFPGQPGNDGNSGVPGIQGSSGGPGEDGAPGAPG 253
>Z82268-5|CAB05195.1| 304|Caenorhabditis elegans Hypothetical
protein F52B11.4 protein.
Length = 304
Score = 30.3 bits (65), Expect = 2.1
Identities = 31/112 (27%), Positives = 34/112 (30%), Gaps = 4/112 (3%)
Frame = -3
Query: 723 AGRGGXXGXXQPNRPGRGXGAXXXGAXPRXXFXGKAXXRGXXXTPAPXRXXXXPRNPT-- 550
AG G G +P RPGR A G R P P P P
Sbjct: 110 AGPAGTPG--KPGRPGRPGAAGLPGNPGRPPAQPCEPITPPPCKPCPQGPAGAPGAPGPQ 167
Query: 549 -DPAQP-SPGXXGGKGXPXXNRPPPAGGXXLXVRQNXSPRPPXGXXXMEXXP 400
D P +PG G G P P A G Q +P P E P
Sbjct: 168 GDAGAPGAPGQGSGAGAPGPAGPKGASGAPGNPGQAGAPGQPGADAQSESIP 219
>Z68301-5|CAA92620.1| 301|Caenorhabditis elegans Hypothetical
protein W01B6.7 protein.
Length = 301
Score = 30.3 bits (65), Expect = 2.1
Identities = 24/97 (24%), Positives = 29/97 (29%), Gaps = 3/97 (3%)
Frame = -3
Query: 762 PPPRXGXDFXSXXAGRGGXXGXXQPNRPGRGXGAXXXGAXP---RXXFXGKAXXRGXXXT 592
PP G G+ G G P PG+G A + G G
Sbjct: 106 PPGPGGSPGKPGKPGKPGAPGA--PGNPGKGASAPCEPVTQPPCQPCPGGPPGPAGPAGP 163
Query: 591 PAPXRXXXXPRNPTDPAQPSPGXXGGKGXPXXNRPPP 481
P P P +P P+ P P G P N P
Sbjct: 164 PGPPGPDGNPGSPAGPSGPGPAGPPGPAGPAGNDGAP 200
>V00148-1|CAA23464.1| 301|Caenorhabditis elegans protein (
Caenorhabditis elegansgene Col-2 coding for a collagen.
).
Length = 301
Score = 30.3 bits (65), Expect = 2.1
Identities = 24/97 (24%), Positives = 29/97 (29%), Gaps = 3/97 (3%)
Frame = -3
Query: 762 PPPRXGXDFXSXXAGRGGXXGXXQPNRPGRGXGAXXXGAXP---RXXFXGKAXXRGXXXT 592
PP G G+ G G P PG+G A + G G
Sbjct: 106 PPGPGGSPGKPGKPGKPGAPGA--PGNPGKGASAPCEPVTQPPCQPCPGGPPGPAGPAGP 163
Query: 591 PAPXRXXXXPRNPTDPAQPSPGXXGGKGXPXXNRPPP 481
P P P +P P+ P P G P N P
Sbjct: 164 PGPPGPDGNPGSPAGPSGPGPAGPPGPAGPAGNDGAP 200
>J01048-1|AAA27990.1| 301|Caenorhabditis elegans protein (
C.elegans (nematode)collagen 2 (col-2) gene, complete
cds. ).
Length = 301
Score = 30.3 bits (65), Expect = 2.1
Identities = 24/97 (24%), Positives = 29/97 (29%), Gaps = 3/97 (3%)
Frame = -3
Query: 762 PPPRXGXDFXSXXAGRGGXXGXXQPNRPGRGXGAXXXGAXP---RXXFXGKAXXRGXXXT 592
PP G G+ G G P PG+G A + G G
Sbjct: 106 PPGPGGSPGKPGKPGKPGAPGA--PGNPGKGASAPCEPVTQPPCQPCPGGPPGPAGPAGP 163
Query: 591 PAPXRXXXXPRNPTDPAQPSPGXXGGKGXPXXNRPPP 481
P P P +P P+ P P G P N P
Sbjct: 164 PGPPGPDGNPGSPAGPSGPGPAGPPGPAGPAGNDGAP 200
>AY347575-1|AAP97869.1| 301|Caenorhabditis elegans COLlagen
structural gene, probabledorsal and ventral cuticle
component, from embryo to adult,but maximal in dauer
(28.0 kD) (col-2) protein.
Length = 301
Score = 30.3 bits (65), Expect = 2.1
Identities = 24/97 (24%), Positives = 29/97 (29%), Gaps = 3/97 (3%)
Frame = -3
Query: 762 PPPRXGXDFXSXXAGRGGXXGXXQPNRPGRGXGAXXXGAXP---RXXFXGKAXXRGXXXT 592
PP G G+ G G P PG+G A + G G
Sbjct: 106 PPGPGGSPGKPGKPGKPGAPGA--PGNPGKGASAPCEPVTQPPCQPCPGGPPGPAGPAGP 163
Query: 591 PAPXRXXXXPRNPTDPAQPSPGXXGGKGXPXXNRPPP 481
P P P +P P+ P P G P N P
Sbjct: 164 PGPPGPDGNPGSPAGPSGPGPAGPPGPAGPAGNDGAP 200
>AF003139-6|AAB54156.1| 327|Caenorhabditis elegans Collagen protein
45 protein.
Length = 327
Score = 30.3 bits (65), Expect = 2.1
Identities = 32/108 (29%), Positives = 33/108 (30%), Gaps = 1/108 (0%)
Frame = +2
Query: 479 AGGGRLXXGXPFPPXXPGL-GWAGSVGLRGXXXXRXGAGVXXXPRXXAXPXKXXLGXAPX 655
A G + G P PG G AG G G G P K G AP
Sbjct: 193 APGDKGSRGYPGESGEPGTPGSAGPKGNAGPAGPPGPPGYPGRPGETGDHGKTIAGEAP- 251
Query: 656 XXAPXPRPGRXGWXXPXXPPRPAXXXXKSXPXRGGGXXNGGXXKHSXP 799
P P PGR G P PP P K G G G P
Sbjct: 252 ---PGP-PGRQGEMGPQGPPGPPGPRGKD----GAGGEKGAPGDQGNP 291
>Z95559-1|CAB08999.1| 289|Caenorhabditis elegans Hypothetical
protein Y41E3.2 protein.
Length = 289
Score = 29.9 bits (64), Expect = 2.8
Identities = 17/64 (26%), Positives = 20/64 (31%)
Frame = -3
Query: 693 QPNRPGRGXGAXXXGAXPRXXFXGKAXXRGXXXTPAPXRXXXXPRNPTDPAQPSPGXXGG 514
QP PG G G+ +G P P P P PA+ P G
Sbjct: 148 QPGIPGDNGPPGEQGPKGPDAAPGEPGPKGPIGPPGPPGQAGAPGEPGSPAKSEPAVPGP 207
Query: 513 KGXP 502
G P
Sbjct: 208 PGPP 211
>Z74472-4|CAA98942.1| 301|Caenorhabditis elegans Hypothetical
protein F23H12.4 protein.
Length = 301
Score = 29.9 bits (64), Expect = 2.8
Identities = 28/104 (26%), Positives = 33/104 (31%), Gaps = 1/104 (0%)
Frame = -3
Query: 780 SPPXXXPPPRXGXDFXSXXAGRGGXXGXXQPNRPGRGXGAXXXGAXPRXXFXGKAXXRGX 601
+PP P P+ G P RPG G PR G G
Sbjct: 143 TPPPCKPCPQGPPGPPGPPGAPGDPGEAGTPGRPGTDAAPGSPG--PR----GPPGPAGE 196
Query: 600 XXTPAPXRXXXXPRNPTDPAQP-SPGXXGGKGXPXXNRPPPAGG 472
P P P ++P P +PG G G P PP A G
Sbjct: 197 AGAPGPAGEPGTPAI-SEPLTPGAPGEPGDSGPPGPPGPPGAPG 239
Score = 29.5 bits (63), Expect = 3.7
Identities = 25/95 (26%), Positives = 28/95 (29%), Gaps = 1/95 (1%)
Frame = -3
Query: 711 GXXGXXQPNRPGRGXGAXXXGAXPRXXFXGKAXXRGXXXTPAPXRXXXXPRNPTDPAQPS 532
G G P P GA P + G P P P P
Sbjct: 183 GSPGPRGPPGPAGEAGAPGPAGEPGTPAISEPLTPGAPGEPGDSGPPGPPGPPGAPGNDG 242
Query: 531 P-GXXGGKGXPXXNRPPPAGGXXLXVRQNXSPRPP 430
P G G KG P + PP G Q+ P PP
Sbjct: 243 PPGPPGPKGAPGPDGPPGVDG------QSGPPGPP 271
>Z71178-2|CAA94875.1| 297|Caenorhabditis elegans Hypothetical
protein B0024.2 protein.
Length = 297
Score = 29.9 bits (64), Expect = 2.8
Identities = 23/86 (26%), Positives = 27/86 (31%)
Frame = -3
Query: 759 PPRXGXDFXSXXAGRGGXXGXXQPNRPGRGXGAXXXGAXPRXXFXGKAXXRGXXXTPAPX 580
P R G G+ G G P GR G+ G+ RG P P
Sbjct: 196 PGRDGEPGQPGNPGKDGRKGRGHPGTAGRPGQPGKQGSAGNP---GRKGERGQDGQPGPG 252
Query: 579 RXXXXPRNPTDPAQPSPGXXGGKGXP 502
P N PG GG+G P
Sbjct: 253 GRPGQPGNRGSDGH--PGTPGGRGLP 276
>Z54237-4|CAN86899.1| 297|Caenorhabditis elegans Hypothetical
protein T11B7.3a protein.
Length = 297
Score = 29.9 bits (64), Expect = 2.8
Identities = 24/85 (28%), Positives = 29/85 (34%), Gaps = 4/85 (4%)
Frame = +2
Query: 476 PAGGGRLXXGXPFPPXXPG----LGWAGSVGLRGXXXXRXGAGVXXXPRXXAXPXKXXLG 643
P G+ G P PP PG +G G G +G G+ P P +
Sbjct: 202 PGADGQRQRGQPGPPGPPGRPGKVGINGEPGQKGIDGENGSEGIPGVPGPRGAPGQPGTI 261
Query: 644 XAPXXXAPXPRPGRXGWXXPXXPPR 718
P PGR G P PPR
Sbjct: 262 GVPGGPG---IPGRDGQYCP-CPPR 282
>U61948-2|AAB03143.2| 345|Caenorhabditis elegans Collagen protein
14 protein.
Length = 345
Score = 29.9 bits (64), Expect = 2.8
Identities = 22/81 (27%), Positives = 25/81 (30%)
Frame = -3
Query: 714 GGXXGXXQPNRPGRGXGAXXXGAXPRXXFXGKAXXRGXXXTPAPXRXXXXPRNPTDPAQP 535
GG PG GA G+ G P P P P P +
Sbjct: 147 GGGCCTCHRGPPGPAGDGGRDGADGVDGTPGEIGPPGPPAPPGPDPHSLFP--PQCPCEA 204
Query: 534 SPGXXGGKGXPXXNRPPPAGG 472
PG G G P + PP A G
Sbjct: 205 PPGDGGPPGQPGPDGPPGAPG 225
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 29.9 bits (64), Expect = 2.8
Identities = 16/48 (33%), Positives = 16/48 (33%)
Frame = -2
Query: 607 GGXPNPRPXXGXXXXXQPNRPGPAESGXXGREGXAXXQPPPPXGGXXP 464
GG P P P G P P G G PPPP G P
Sbjct: 724 GGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPP 771
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 29.9 bits (64), Expect = 2.8
Identities = 16/48 (33%), Positives = 16/48 (33%)
Frame = -2
Query: 607 GGXPNPRPXXGXXXXXQPNRPGPAESGXXGREGXAXXQPPPPXGGXXP 464
GG P P P G P P G G PPPP G P
Sbjct: 724 GGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPP 771
>M25480-1|AAA27986.1| 326|Caenorhabditis elegans collagen protein.
Length = 326
Score = 29.9 bits (64), Expect = 2.8
Identities = 22/81 (27%), Positives = 25/81 (30%)
Frame = -3
Query: 714 GGXXGXXQPNRPGRGXGAXXXGAXPRXXFXGKAXXRGXXXTPAPXRXXXXPRNPTDPAQP 535
GG PG GA G+ G P P P P P +
Sbjct: 128 GGGCCTCHRGPPGPAGDGGRDGADGVDGTPGEIGPPGPPAPPGPDPHSLFP--PQCPCEA 185
Query: 534 SPGXXGGKGXPXXNRPPPAGG 472
PG G G P + PP A G
Sbjct: 186 PPGDGGPPGQPGPDGPPGAPG 206
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 29.9 bits (64), Expect = 2.8
Identities = 16/48 (33%), Positives = 16/48 (33%)
Frame = -2
Query: 607 GGXPNPRPXXGXXXXXQPNRPGPAESGXXGREGXAXXQPPPPXGGXXP 464
GG P P P G P P G G PPPP G P
Sbjct: 307 GGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPP 354
>AF026211-4|AAB71295.1| 416|Caenorhabditis elegans Collagen protein
40 protein.
Length = 416
Score = 29.9 bits (64), Expect = 2.8
Identities = 29/112 (25%), Positives = 32/112 (28%), Gaps = 2/112 (1%)
Frame = +2
Query: 476 PAGGGRLXXGXPFPPXXPG-LGWAGSVGLRGXXXXRXGAGVXXXPRXXAXPXKXXLGXAP 652
P+GGG G P PP G G G+ G G P A P
Sbjct: 202 PSGGGEGPAGPPGPPGPAGNPGTDGAPGNPGAPGQVTETPGTPGPAGAAGPPGPPGPAGN 261
Query: 653 XXXAPXPRPGRXGWXXPXXPP-RPAXXXXKSXPXRGGGXXNGGXXKHSXPXR 805
A PG G P P P G +GG H P R
Sbjct: 262 PGSAGASEPGPAGPAGDAGPDGAPGNAGAPGAPGEAGAPGSGGGCDHCPPPR 313
>Z70682-4|CAA94581.1| 299|Caenorhabditis elegans Hypothetical
protein F08G5.4 protein.
Length = 299
Score = 24.2 bits (50), Expect(2) = 3.5
Identities = 10/27 (37%), Positives = 11/27 (40%)
Frame = -1
Query: 947 PPPPAGXXGGXGGPXXRGRXXXXXRTG 867
PP P G G G P G +TG
Sbjct: 95 PPGPPGPPGAPGAPGDDGHAGEAGKTG 121
Score = 23.8 bits (49), Expect(2) = 3.5
Identities = 16/60 (26%), Positives = 17/60 (28%)
Frame = -1
Query: 761 PHXGXGPTXXXXGPGGGAXXXEXNXTAPAXGXGPXXXAPGPEXXSGXRXRXGGXAXPPPP 582
P GP PG + PA G APGP G G P P
Sbjct: 140 PAGEAGPAGPDGAPGAPGPDGQPGQDGPAGQPG----APGPAGPEGDAGAPGDAGAPGAP 195
>Z82083-5|CAB04973.1| 298|Caenorhabditis elegans Hypothetical
protein ZK1010.7 protein.
Length = 298
Score = 29.5 bits (63), Expect = 3.7
Identities = 24/79 (30%), Positives = 25/79 (31%)
Frame = +2
Query: 485 GGRLXXGXPFPPXXPGLGWAGSVGLRGXXXXRXGAGVXXXPRXXAXPXKXXLGXAPXXXA 664
GG G P PP G G G G RG R P P + P
Sbjct: 177 GGVGPQGPPGPPGNNGEG--GRDGPRGEQG-RPAISTPALPGDPGAPGEPGPSGLPGDQG 233
Query: 665 PXPRPGRXGWXXPXXPPRP 721
RPG G P PP P
Sbjct: 234 QAGRPGSDGAPGPQGPPGP 252
Score = 28.3 bits (60), Expect = 8.6
Identities = 21/91 (23%), Positives = 23/91 (25%)
Frame = -3
Query: 762 PPPRXGXDFXSXXAGRGGXXGXXQPNRPGRGXGAXXXGAXPRXXFXGKAXXRGXXXTPAP 583
PP G G G P PG G G+A G P P
Sbjct: 187 PPGNNGEGGRDGPRGEQGRPAISTPALPGDPGAPGEPGPSGLPGDQGQAGRPGSDGAPGP 246
Query: 582 XRXXXXPRNPTDPAQPSPGXXGGKGXPXXNR 490
P P Q P G+ P R
Sbjct: 247 QGPPGPPGQQGHPGQAGPAGQPGQPGPQGER 277
>Z81124-1|CAB03369.1| 312|Caenorhabditis elegans Hypothetical
protein T21B4.2 protein.
Length = 312
Score = 29.5 bits (63), Expect = 3.7
Identities = 32/115 (27%), Positives = 36/115 (31%), Gaps = 5/115 (4%)
Frame = +2
Query: 476 PAGGGRLXXGXPFPPXXPG----LGWAGSVGLRGXXXXRXGAGVXXXPRXXAXPXKXXLG 643
P+GG G P PP PG G G+ G G G P A P G
Sbjct: 196 PSGGAAGPPGPPGPPGGPGNDGQPGGPGNPGAPGAVTEVPGQQGPPGPPGPAGP-PGPAG 254
Query: 644 XAPXXXAPXPRPGRXGWXXPXXPP-RPAXXXXKSXPXRGGGXXNGGXXKHSXPXR 805
A A +PG G P P P G +GG H P R
Sbjct: 255 NA--GQAGYAQPGPAGPPGDAGPDGAPGNPGQPGAPGDAGAPGSGGGCDHCPPPR 307
>Z79694-6|CAB01958.1| 316|Caenorhabditis elegans Hypothetical
protein C15A11.6 protein.
Length = 316
Score = 29.5 bits (63), Expect = 3.7
Identities = 22/83 (26%), Positives = 24/83 (28%)
Frame = -3
Query: 720 GRGGXXGXXQPNRPGRGXGAXXXGAXPRXXFXGKAXXRGXXXTPAPXRXXXXPRNPTDPA 541
G G G P P GA G G G +P P +P
Sbjct: 142 GPAGAPGQPGPKGPNGNPGAPAQGGGQGPP--GPPGPAGSAGSPGQAGAPGNPGSPGKSG 199
Query: 540 QPSPGXXGGKGXPXXNRPPPAGG 472
Q G G G P PP A G
Sbjct: 200 QRGRGLPGPSGAPGSQGPPGAPG 222
>Z79694-5|CAB01961.1| 316|Caenorhabditis elegans Hypothetical
protein C15A11.5 protein.
Length = 316
Score = 29.5 bits (63), Expect = 3.7
Identities = 22/83 (26%), Positives = 24/83 (28%)
Frame = -3
Query: 720 GRGGXXGXXQPNRPGRGXGAXXXGAXPRXXFXGKAXXRGXXXTPAPXRXXXXPRNPTDPA 541
G G G P P GA G G G +P P +P
Sbjct: 142 GPAGVPGQPGPKGPNGNPGAPAQGGGQGPP--GPPGPAGSAGSPGQAGAPGNPGSPGKSG 199
Query: 540 QPSPGXXGGKGXPXXNRPPPAGG 472
Q G G G P PP A G
Sbjct: 200 QRGRGLPGPSGAPGPQGPPGAPG 222
>Z79694-1|CAB01959.1| 303|Caenorhabditis elegans Hypothetical
protein C15A11.1 protein.
Length = 303
Score = 29.5 bits (63), Expect = 3.7
Identities = 23/78 (29%), Positives = 24/78 (30%), Gaps = 9/78 (11%)
Frame = -1
Query: 746 GPTXXXXGPGGGAXXXEXNXTAPAXGXGPXXX--APGPEXXSGXRXRXG-------GXAX 594
GP+ G A E PA GP APGP G G A
Sbjct: 130 GPSGAPGADGDAAGPGEAGPAGPAGPPGPDGQPGAPGPNGQPGAAGTTSTNEPGSPGPAG 189
Query: 593 PPPPXGXXXXXATQPTRP 540
PP P G A P P
Sbjct: 190 PPGPAGPAGEDAAAPESP 207
Score = 29.1 bits (62), Expect = 4.9
Identities = 17/50 (34%), Positives = 21/50 (42%), Gaps = 5/50 (10%)
Frame = -2
Query: 598 PNPRPXX-GXXXXXQPNRPGPA----ESGXXGREGXAXXQPPPPXGGXXP 464
PN +P G +P PGPA +G G + A PP P G P
Sbjct: 167 PNGQPGAAGTTSTNEPGSPGPAGPPGPAGPAGEDAAAPESPPGPPGPPGP 216
>Z68215-7|CAA92453.1| 289|Caenorhabditis elegans Hypothetical
protein C53B4.5 protein.
Length = 289
Score = 29.5 bits (63), Expect = 3.7
Identities = 24/88 (27%), Positives = 27/88 (30%), Gaps = 1/88 (1%)
Frame = -3
Query: 762 PPPRXGXDFXSXXAGRGGXXGXXQPNRPGRGXGAXXXGAXPRXXFXGKAXXRGXXXTPAP 583
PP G + G G G QP PG G+ GK +G P
Sbjct: 181 PPGPGGKPGPAGPPGENGRNGEPQPGSPGEPGRPGQPGSRGPAGQPGKDGAQGG---PGE 237
Query: 582 XRXXXXPRNPTDPAQPS-PGXXGGKGXP 502
P P QP PG G G P
Sbjct: 238 KGANGEPGQPGRDGQPGRPGQPGRDGHP 265
>AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical
protein F59E12.9 protein.
Length = 1621
Score = 29.5 bits (63), Expect = 3.7
Identities = 28/103 (27%), Positives = 31/103 (30%), Gaps = 7/103 (6%)
Frame = +2
Query: 473 PPAGGGRLXXGXPF---PPXXPGLGWAGSV----GLRGXXXXRXGAGVXXXPRXXAXPXK 631
P GG + G P P PG G + +RG R G G P
Sbjct: 1491 PMRGGPPMRGGPPMFRGGPPGPGRGMPSPMMRGSSMRGGFPQR-GGGPGMGPSQYYHDSP 1549
Query: 632 XXLGXAPXXXAPXPRPGRXGWXXPXXPPRPAXXXXKSXPXRGG 760
G P P P G GW PPR P GG
Sbjct: 1550 QNRGP-PMGGLPPPHGGMNGWRGGPPPPRGGSHCQGPPPLMGG 1591
Score = 28.7 bits (61), Expect = 6.5
Identities = 19/56 (33%), Positives = 19/56 (33%)
Frame = -2
Query: 625 GXGXXXGGXPNPRPXXGXXXXXQPNRPGPAESGXXGREGXAXXQPPPPXGGXXPXS 458
G GG P PR P P G R G PPPP GG P S
Sbjct: 1565 GMNGWRGGPPPPR------GGSHCQGPPPLMGGPPPRLGMPPPGPPPPNGGPPPPS 1614
>Z81138-4|CAB03474.1| 304|Caenorhabditis elegans Hypothetical
protein W05B2.6 protein.
Length = 304
Score = 29.1 bits (62), Expect = 4.9
Identities = 42/162 (25%), Positives = 45/162 (27%), Gaps = 4/162 (2%)
Frame = -3
Query: 723 AGRGGXXGXXQPNRPGRGXGAXXXGAXPRXXFXGKAXXRGXXXTPAPXRXXXXPRNPTDP 544
AG G G +P RPGR A G R P P P P
Sbjct: 110 AGPAGTPG--KPGRPGRPGAAGLPGNPGRPPAQPCEPITPPPCKPCPQGPAGAPGAPGPQ 167
Query: 543 AQP-SPGXXG---GKGXPXXNRPPPAGGXXLXVRQNXSPRPPXGXXXMEXXPXXDPXXXX 376
+PG G G G P P A G Q +P P E P
Sbjct: 168 GDAGAPGQAGQGSGAGAPGPAGPKGAPGAPGNPGQAGAPGQPGSDAQSES----SPGAPG 223
Query: 375 XXXXXXGPXPRXMPLXXHXXRAMXGGGGPXQAWXPXPSGXXG 250
P P P GGP QA P P G G
Sbjct: 224 QAGPQGPPGPAGSP---------GAPGGPGQAGAPGPKGPSG 256
>Z81138-3|CAB63321.1| 304|Caenorhabditis elegans Hypothetical
protein W05B2.5 protein.
Length = 304
Score = 29.1 bits (62), Expect = 4.9
Identities = 42/162 (25%), Positives = 45/162 (27%), Gaps = 4/162 (2%)
Frame = -3
Query: 723 AGRGGXXGXXQPNRPGRGXGAXXXGAXPRXXFXGKAXXRGXXXTPAPXRXXXXPRNPTDP 544
AG G G +P RPGR A G R P P P P
Sbjct: 110 AGPAGTPG--KPGRPGRPGAAGLPGNPGRPPAQPCEPITPPPCKPCPQGPAGAPGAPGPQ 167
Query: 543 AQP-SPGXXG---GKGXPXXNRPPPAGGXXLXVRQNXSPRPPXGXXXMEXXPXXDPXXXX 376
+PG G G G P P A G Q +P P E P
Sbjct: 168 GDAGAPGQAGQGSGAGAPGPAGPKGAPGAPGNPGQAGAPGQPGSDAQSES----SPGAPG 223
Query: 375 XXXXXXGPXPRXMPLXXHXXRAMXGGGGPXQAWXPXPSGXXG 250
P P P GGP QA P P G G
Sbjct: 224 QAGPQGPPGPAGSP---------GAPGGPGQAGAPGPKGPSG 256
>Z81138-1|CAB03475.1| 304|Caenorhabditis elegans Hypothetical
protein W05B2.1 protein.
Length = 304
Score = 29.1 bits (62), Expect = 4.9
Identities = 42/162 (25%), Positives = 45/162 (27%), Gaps = 4/162 (2%)
Frame = -3
Query: 723 AGRGGXXGXXQPNRPGRGXGAXXXGAXPRXXFXGKAXXRGXXXTPAPXRXXXXPRNPTDP 544
AG G G +P RPGR A G R P P P P
Sbjct: 110 AGPAGTPG--KPGRPGRPGAAGLPGNPGRPPAQPCEPITPPPCKPCPQGPAGAPGAPGPQ 167
Query: 543 AQP-SPGXXG---GKGXPXXNRPPPAGGXXLXVRQNXSPRPPXGXXXMEXXPXXDPXXXX 376
+PG G G G P P A G Q +P P E P
Sbjct: 168 GDAGAPGQAGQGSGAGAPGPAGPKGAPGAPGNPGQAGAPGQPGSDAQSES----SPGAPG 223
Query: 375 XXXXXXGPXPRXMPLXXHXXRAMXGGGGPXQAWXPXPSGXXG 250
P P P GGP QA P P G G
Sbjct: 224 QAGPQGPPGPAGSP---------GAPGGPGQAGAPGPKGPSG 256
>Z71177-3|CAA94869.1| 325|Caenorhabditis elegans Hypothetical
protein AC3.6 protein.
Length = 325
Score = 29.1 bits (62), Expect = 4.9
Identities = 28/100 (28%), Positives = 30/100 (30%), Gaps = 2/100 (2%)
Frame = +2
Query: 485 GGRLXXGXPFPPXXPGLGWA-GSVGLRGXXXXRXGAGVXXXPRXXAXPXKXXLGXAPXXX 661
GGR G P P G G A G G G R G P P + G P
Sbjct: 180 GGRGLPGYPGMPGDNGSGGANGHDGATG-QPGRSGTRSYGSPGPAGSPGRVGRGGPPGPD 238
Query: 662 APXPRPGRXGWXXPXXPP-RPAXXXXKSXPXRGGGXXNGG 778
P G G P +P P R GG G
Sbjct: 239 GGYPMSGEPGSSGPQGKAGQPGGPGVDGHPGRPGGSGRPG 278
>AF040642-7|AAB94952.1| 329|Caenorhabditis elegans Collagen protein
68 protein.
Length = 329
Score = 29.1 bits (62), Expect = 4.9
Identities = 27/103 (26%), Positives = 30/103 (29%), Gaps = 4/103 (3%)
Frame = -3
Query: 777 PPXXXPPPRXGXDFXSXXAGRGGXXGXX--QPNRPGRGXGAXXXG--AXPRXXFXGKAXX 610
PP PP G D G G G P PG G P +
Sbjct: 223 PPGPQGPP--GADGLPGNPGAPGVPGQVIEVPGTPGPAGPPGPPGPIGPPGQPGAPGSSQ 280
Query: 609 RGXXXTPAPXRXXXXPRNPTDPAQPSPGXXGGKGXPXXNRPPP 481
G P P NP P +P P G G + PPP
Sbjct: 281 PGPQGPPGDPGIDGAPGNPGSPGEPGPPGQPGAGGGCDHCPPP 323
>Z68219-2|CAA92476.1| 300|Caenorhabditis elegans Hypothetical
protein T05A1.2 protein.
Length = 300
Score = 28.7 bits (61), Expect = 6.5
Identities = 17/63 (26%), Positives = 20/63 (31%)
Frame = -1
Query: 722 PGGGAXXXEXNXTAPAXGXGPXXXAPGPEXXSGXRXRXGGXAXPPPPXGXXXXXATQPTR 543
PG P G G PGP +G + G P PP QP +
Sbjct: 163 PGSEGPPGPPGHDGPNGGPGQPGQ-PGPHGPNGHPGKPGSQGPPGPPGHSDEPKPGQPGQ 221
Query: 542 PSR 534
P R
Sbjct: 222 PGR 224
Score = 28.7 bits (61), Expect = 6.5
Identities = 23/91 (25%), Positives = 26/91 (28%), Gaps = 1/91 (1%)
Frame = -3
Query: 777 PPXXXPPPRXGXDFXSXXAGRGGXXGXXQPNRPGRGXGAXXXGAXPRXXFXGKAXXRGXX 598
P P G G G +P +PG+ A G GK G
Sbjct: 187 PGPHGPNGHPGKPGSQGPPGPPGHSDEPKPGQPGQPGRAGPRGPRGVAGIKGKDGAPGSP 246
Query: 597 XTPAPXRXXXXPRNPTDPAQPS-PGXXGGKG 508
P P P P QP PG G G
Sbjct: 247 GQPGPRGGPGEPGQDGAPGQPGLPGSDGTPG 277
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 28.7 bits (61), Expect = 6.5
Identities = 14/45 (31%), Positives = 14/45 (31%)
Frame = -2
Query: 598 PNPRPXXGXXXXXQPNRPGPAESGXXGREGXAXXQPPPPXGGXXP 464
P P P P P P G G PPPP G P
Sbjct: 300 PPPPPGRTPGPPGMPGMPPPPPPSRFGPPGMGGMPPPPPPGMRYP 344
>U50191-2|AAK31556.2| 335|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 10, isoform a protein.
Length = 335
Score = 28.7 bits (61), Expect = 6.5
Identities = 17/51 (33%), Positives = 18/51 (35%)
Frame = -3
Query: 552 TDPAQPSPGXXGGKGXPXXNRPPPAGGXXLXVRQNXSPRPPXGXXXMEXXP 400
T P P PG GG G P P P G + P P G M P
Sbjct: 193 TGPTGP-PGYRGGPGAPGDKGPTPEGDLKEGPPGDEGPPGPIGAPGMPGLP 242
>U50191-1|AAO38600.2| 372|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 10, isoform b protein.
Length = 372
Score = 28.7 bits (61), Expect = 6.5
Identities = 17/51 (33%), Positives = 18/51 (35%)
Frame = -3
Query: 552 TDPAQPSPGXXGGKGXPXXNRPPPAGGXXLXVRQNXSPRPPXGXXXMEXXP 400
T P P PG GG G P P P G + P P G M P
Sbjct: 230 TGPTGP-PGYRGGPGAPGDKGPTPEGDLKEGPPGDEGPPGPIGAPGMPGLP 279
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 28.7 bits (61), Expect = 6.5
Identities = 14/45 (31%), Positives = 14/45 (31%)
Frame = -2
Query: 598 PNPRPXXGXXXXXQPNRPGPAESGXXGREGXAXXQPPPPXGGXXP 464
P P P P P P G G PPPP G P
Sbjct: 310 PPPPPGRTPGPPGMPGMPPPPPPSRFGPPGMGGMPPPPPPGMRYP 354
>L12692-1|AAA17395.2| 356|Caenorhabditis elegans collagen protein.
Length = 356
Score = 28.7 bits (61), Expect = 6.5
Identities = 17/51 (33%), Positives = 18/51 (35%)
Frame = -3
Query: 552 TDPAQPSPGXXGGKGXPXXNRPPPAGGXXLXVRQNXSPRPPXGXXXMEXXP 400
T P P PG GG G P P P G + P P G M P
Sbjct: 214 TGPTGP-PGYRGGPGAPGDKGPTPEGDLKEGPPGDEGPPGPIGAPGMPGLP 263
>AL132952-24|CAB61143.2| 351|Caenorhabditis elegans Hypothetical
protein Y51H4A.9 protein.
Length = 351
Score = 28.7 bits (61), Expect = 6.5
Identities = 18/49 (36%), Positives = 19/49 (38%), Gaps = 4/49 (8%)
Frame = -2
Query: 619 GXXXGGXPNPRPXXGXXXXXQPNRPG----PAESGXXGREGXAXXQPPP 485
G G P P+ G QP PG P E G G EG PPP
Sbjct: 299 GSSLPGAPGPQGDAGAPG--QPGAPGQQGEPGEDGESGSEGACDHCPPP 345
>Z69383-13|CAA93404.2| 181|Caenorhabditis elegans Hypothetical
protein F13E9.8 protein.
Length = 181
Score = 28.3 bits (60), Expect = 8.6
Identities = 11/18 (61%), Positives = 11/18 (61%)
Frame = -1
Query: 947 PPPPAGXXGGXGGPXXRG 894
P PP G GG GGP RG
Sbjct: 131 PGPPHGGPGGPGGPGGRG 148
>U41553-3|AAA83293.1| 289|Caenorhabditis elegans Collagen protein
19 protein.
Length = 289
Score = 28.3 bits (60), Expect = 8.6
Identities = 41/182 (22%), Positives = 44/182 (24%), Gaps = 4/182 (2%)
Frame = -1
Query: 956 PGXPPPPAGXXGGXGGPXXRGRXXXXXRTGXXXXXXXXXXXGXXXXXXXXRGXGXSVFXP 777
P PP P G G G P G G G G P
Sbjct: 99 PAGPPGPPGEGGQKGNPGHDGDDGKPGAPGVIVAITHDIPGGCIKCPPGRPGPKGPSGLP 158
Query: 776 LRXXXPHXGXGPTXXXXGPGGGAXXXEXNXTAPAXGXGPXXXAPGPEXXSGXRXRXGGXA 597
P G G GP GG A G GP G + G
Sbjct: 159 -GSAGPAGGNG-RRGPPGPVGGPGEQGPQGDAGRPGAAGRPGPAGPRGEPGTEYKPGQPG 216
Query: 596 XPPP--PXGXXXXXATQPTRPSR--VRGXXAGRXRXXXTAPPXRGGXXFX*GKTXXPAPR 429
P P P G A P P G R P + G G+ P P
Sbjct: 217 RPGPQGPRG-ETGPAGNPGAPGNDGEAGKNGNAGRPGPPGHPGKNGVPGQKGEDAAPGPD 275
Query: 428 XG 423
G
Sbjct: 276 AG 277
>M25481-1|AAA27987.1| 283|Caenorhabditis elegans collagen protein.
Length = 283
Score = 28.3 bits (60), Expect = 8.6
Identities = 41/182 (22%), Positives = 44/182 (24%), Gaps = 4/182 (2%)
Frame = -1
Query: 956 PGXPPPPAGXXGGXGGPXXRGRXXXXXRTGXXXXXXXXXXXGXXXXXXXXRGXGXSVFXP 777
P PP P G G G P G G G G P
Sbjct: 93 PAGPPGPPGEGGQKGNPGHDGDDGKPGAPGVIVAITHDIPGGCIKCPPGCPGPKGPSGLP 152
Query: 776 LRXXXPHXGXGPTXXXXGPGGGAXXXEXNXTAPAXGXGPXXXAPGPEXXSGXRXRXGGXA 597
P G G GP GG A G GP G + G
Sbjct: 153 -GSAGPAGGNG-RRGPPGPVGGPGEQGPQGDAGRPGAAGRPGPAGPRGEPGTEYKPGQPG 210
Query: 596 XPPP--PXGXXXXXATQPTRPSR--VRGXXAGRXRXXXTAPPXRGGXXFX*GKTXXPAPR 429
P P P G A P P G R P + G G+ P P
Sbjct: 211 RPGPQGPRG-ETGPAGNPGAPGNDGEAGKNGNAGRPGPPGHPGKNGVPGQKGEDAAPGPD 269
Query: 428 XG 423
G
Sbjct: 270 AG 271
>AF022985-10|AAB69961.1| 325|Caenorhabditis elegans Collagen
protein 142 protein.
Length = 325
Score = 28.3 bits (60), Expect = 8.6
Identities = 26/101 (25%), Positives = 30/101 (29%), Gaps = 1/101 (0%)
Frame = -3
Query: 774 PXXXPPPRXGXDFXSXXAGRGGXXGXXQPNRPGRGXGAXXXGAXPRXXFXGKAXXRGXXX 595
P P P+ A GG G P P G+ P +
Sbjct: 144 PPGAPGPKGNNGQPGAPAQSGGR-GPPGPRGPAGDAGSPGQPGHPGSPGNPGRGGQRSRG 202
Query: 594 TPAPXRXXXXPRNPTDPAQPSPGXXGGKGXPXXNRPP-PAG 475
P P P P QP G GG G P PP P+G
Sbjct: 203 LPGPSGRPGPPGPAGGPGQP--GHSGGAGSPGPQGPPGPSG 241
>AF000198-7|AAB53052.1| 418|Caenorhabditis elegans Collagen protein
50 protein.
Length = 418
Score = 28.3 bits (60), Expect = 8.6
Identities = 26/101 (25%), Positives = 30/101 (29%), Gaps = 9/101 (8%)
Frame = -1
Query: 746 GPTXXXXGPGGGAXXXEXNXTAPAXGXGP--XXXAPGPEXXSG-------XRXRXGGXAX 594
GP G GA E PA GP APGP+ G + G A
Sbjct: 183 GPAGAAGPDGEGAGYAEPGPAGPAGPPGPDGQPGAPGPDGQPGAGGTTSTNQPGPPGPAG 242
Query: 593 PPPPXGXXXXXATQPTRPSRVRGXXAGRXRXXXTAPPXRGG 471
PP P G A P+ G + P G
Sbjct: 243 PPGPAGPAGEDAYAQPSPAGTPGPPGPPGKDGEAGPDGPAG 283
>AC024775-6|AAK68452.2| 304|Caenorhabditis elegans Collagen protein
108 protein.
Length = 304
Score = 28.3 bits (60), Expect = 8.6
Identities = 23/92 (25%), Positives = 29/92 (31%), Gaps = 6/92 (6%)
Frame = -3
Query: 690 PNRPGRGXGAXXXGAXPRXXFXGKAXXRGXXXTPAPXRXXXXPRNPTDPAQP------SP 529
P PG A G+ G+ G P P +P P + +P
Sbjct: 161 PGPPGPAGDAGSDGSPGAPGSDGQPGAAGDKGPAGPNGNPGAPGSPGKPGEDGKSEPITP 220
Query: 528 GXXGGKGXPXXNRPPPAGGXXLXVRQNXSPRP 433
G G G P PP A G Q +P P
Sbjct: 221 GAPGPAGPPGPQGPPGAPGQPGHDGQPGTPGP 252
Score = 28.3 bits (60), Expect = 8.6
Identities = 20/72 (27%), Positives = 24/72 (33%), Gaps = 1/72 (1%)
Frame = -3
Query: 720 GRGGXXGXXQPNRPGRGXGAXXXGAXPRXXFXGKAXXRGXXXTPAPXRXXXXPRNPTDPA 541
G+ G G +P PG A G G+ G TP P P P
Sbjct: 207 GKPGEDGKSEPITPGAPGPAGPPGPQGPPGAPGQPGHDGQPGTPGPKGPNGNPGAPGADG 266
Query: 540 QP-SPGXXGGKG 508
P +PG G G
Sbjct: 267 NPGTPGVAGVAG 278
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,743,254
Number of Sequences: 27780
Number of extensions: 275428
Number of successful extensions: 2158
Number of sequences better than 10.0: 68
Number of HSP's better than 10.0 without gapping: 641
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1885
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2486134266
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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