Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP11_F_J07
         (966 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3D6.04c |mad1||mitotic spindle checkpoint protein Mad1|Schiz...    31   0.24 
SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr...    29   0.74 
SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|ch...    29   0.98 
SPAC17H9.06c |||conserved fungal protein|Schizosaccharomyces pom...    28   2.3  
SPAC11E3.11c |||guanyl-nucleotide exchange factor |Schizosacchar...    26   6.9  
SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pomb...    26   6.9  
SPAC140.03 |arb1||argonaute binding protein 1|Schizosaccharomyce...    26   6.9  
SPAC144.09c |sfc2||RNA polymerase III transcription factor TFIII...    26   9.1  

>SPBC3D6.04c |mad1||mitotic spindle checkpoint protein
           Mad1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 689

 Score = 31.1 bits (67), Expect = 0.24
 Identities = 22/73 (30%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
 Frame = +1

Query: 442 VEYQLIQLKNKLQKSDLHFANDSEQGNLNDASENTHGYKTIIQIDNDCVTKK-EEKILEC 618
           +E+QL  LKN L++ +L F  + EQ  L       H  K  +Q+    V K+ EE+    
Sbjct: 60  LEFQLENLKNDLKRKELEF--EREQIELQRKLAEEHEQKNSLQLRLTLVEKQLEEQSTSY 117

Query: 619 LMENDEMNNSLDS 657
             E +E+ N  ++
Sbjct: 118 QKEIEEVRNEKEA 130


>SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1516

 Score = 29.5 bits (63), Expect = 0.74
 Identities = 15/54 (27%), Positives = 27/54 (50%)
 Frame = -3

Query: 298  KEFSKIGVKFSVLRHMRHTVEKSISSYFFQ*KIYMKFLENIWEYLNVSSLKLLF 137
            K F K   K + + H+ + V  S  +Y    +IY   + +I+ ++NV +   LF
Sbjct: 1277 KFFEKPKYKITDVIHVLNKVHDSCQAYKVNYEIYNALIRSIYRFINVEAFNSLF 1330


>SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 750

 Score = 29.1 bits (62), Expect = 0.98
 Identities = 17/59 (28%), Positives = 30/59 (50%)
 Frame = +1

Query: 442 VEYQLIQLKNKLQKSDLHFANDSEQGNLNDASENTHGYKTIIQIDNDCVTKKEEKILEC 618
           V+ +  +L  +L K  LH A  + + N     +N+   K+ +   ND +TK + +I EC
Sbjct: 338 VDLETPKLVEELTKQ-LHVAESTLKENSEKFKQNSESLKSRVDNLNDYITKLQNEIDEC 395


>SPAC17H9.06c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 601

 Score = 27.9 bits (59), Expect = 2.3
 Identities = 32/114 (28%), Positives = 55/114 (48%), Gaps = 6/114 (5%)
 Frame = +1

Query: 349 VERNDGLPQNICEECFTKFNGILKFRE-ACKIVEYQLIQLKNKLQKS-----DLHFANDS 510
           V+RND     I      K N +LK  + A K       +   KL++S     D      +
Sbjct: 8   VQRNDVQKYPITRFVKRKSNVVLKKNKGAMKSNSNSRSRGNKKLKESQFSSRDNFRTTQT 67

Query: 511 EQGNLNDASENTHGYKTIIQIDNDCVTKKEEKILECLMENDEMNNSLDSENSIT 672
           +  + ++ S+NT+    ++ IDN+   KKEE   E L + D+ ++S++ EN I+
Sbjct: 68  QASSSSEPSDNTNRLVPVVIIDNNTP-KKEESNAEKL-KLDKDSSSVNYENQIS 119


>SPAC11E3.11c |||guanyl-nucleotide exchange factor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 942

 Score = 26.2 bits (55), Expect = 6.9
 Identities = 19/46 (41%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
 Frame = +1

Query: 475 LQKSDLHFA--NDSEQGNLNDASENTHGYKTIIQIDNDCVTKKEEK 606
           L  +DLH A  + SE+ + N   ENT  Y++I Q  ND     EEK
Sbjct: 439 LLNTDLHIAELSASERMSRNQFVENT--YRSIKQALNDSFDGNEEK 482


>SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1778

 Score = 26.2 bits (55), Expect = 6.9
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = +1

Query: 436  KIVEYQLIQLKNKLQKSDLHFANDSEQGNLNDASENTHGYKTII 567
            K++EYQL Q +  L  S  H A+      +   S  + GY++I+
Sbjct: 1229 KLLEYQLDQTEVYLDLSGTHAASPRSSMTVKPLSLCSSGYESIV 1272


>SPAC140.03 |arb1||argonaute binding protein 1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 399

 Score = 26.2 bits (55), Expect = 6.9
 Identities = 15/35 (42%), Positives = 22/35 (62%), Gaps = 3/35 (8%)
 Frame = +1

Query: 589 TKKEEKILECLMENDEMNNSLDS---ENSITILDH 684
           T KE   LE ++E+D +NN++D    E S T LD+
Sbjct: 345 TNKER--LEVILESDLLNNTVDGTHLEGSFTFLDN 377


>SPAC144.09c |sfc2||RNA polymerase III transcription factor
           TFIIIA|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 374

 Score = 25.8 bits (54), Expect = 9.1
 Identities = 17/59 (28%), Positives = 25/59 (42%), Gaps = 1/59 (1%)
 Frame = +1

Query: 382 CEECFTKFNGILKFREACKIVEYQLIQLKNKLQKSDLHFANDSE-QGNLNDASENTHGY 555
           C+ECF+K   +     AC      L+      Q  +L FA   + Q ++N A E    Y
Sbjct: 120 CDECFSKHQQLRSHISAC---HTHLLPYPCTYQDCELRFATKQKLQNHVNRAHEKIISY 175


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,593,991
Number of Sequences: 5004
Number of extensions: 53627
Number of successful extensions: 153
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 495302128
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)