Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP11_F_J07
         (966 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF025453-12|AAK31405.1|  600|Caenorhabditis elegans Hypothetical...    33   0.40 
Z81513-2|CAB04186.2|  489|Caenorhabditis elegans Hypothetical pr...    28   8.7  
AF515833-1|AAM55225.1|  489|Caenorhabditis elegans synaptonemal ...    28   8.7  

>AF025453-12|AAK31405.1|  600|Caenorhabditis elegans Hypothetical
           protein C08F1.8 protein.
          Length = 600

 Score = 32.7 bits (71), Expect = 0.40
 Identities = 19/78 (24%), Positives = 37/78 (47%)
 Frame = -2

Query: 428 SLNLSIPLNFVKHSSHMFWGSPSFLSTLIPCNYINCCRIINLIKRIFKDRRQILCTKTHA 249
           SLN+ +P+N +    +  W      + L+   +     ++  +K IF      L + T  
Sbjct: 103 SLNILLPVNAII-GLYSSWAQVLVTNLLVGVLFYLLLVVLTQLKEIFSPIHYSLMSTTKT 161

Query: 248 TYSRKIH*FVFFSMKDLY 195
           T ++KI   +FF++ +LY
Sbjct: 162 TNAQKIFLILFFALTELY 179


>Z81513-2|CAB04186.2|  489|Caenorhabditis elegans Hypothetical
           protein F26D2.2 protein.
          Length = 489

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 16/75 (21%), Positives = 36/75 (48%)
 Frame = +1

Query: 421 FREACKIVEYQLIQLKNKLQKSDLHFANDSEQGNLNDASENTHGYKTIIQIDNDCVTKKE 600
           F+E+CK +E QL+ +K  +       + + E+ +LN+A      ++       D ++ +E
Sbjct: 86  FKESCKSIELQLVSVKKSIPDRTKLQSGEKEK-SLNEADYELSKFE-------DLLSSRE 137

Query: 601 EKILECLMENDEMNN 645
            ++ + +      NN
Sbjct: 138 RELTKIIQREQSRNN 152


>AF515833-1|AAM55225.1|  489|Caenorhabditis elegans synaptonemal
           complex protein SYP-1 protein.
          Length = 489

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 16/75 (21%), Positives = 36/75 (48%)
 Frame = +1

Query: 421 FREACKIVEYQLIQLKNKLQKSDLHFANDSEQGNLNDASENTHGYKTIIQIDNDCVTKKE 600
           F+E+CK +E QL+ +K  +       + + E+ +LN+A      ++       D ++ +E
Sbjct: 86  FKESCKSIELQLVSVKKSIPDRTKLQSGEKEK-SLNEADYELSKFE-------DLLSSRE 137

Query: 601 EKILECLMENDEMNN 645
            ++ + +      NN
Sbjct: 138 RELTKIIQREQSRNN 152


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,028,054
Number of Sequences: 27780
Number of extensions: 290984
Number of successful extensions: 753
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 735
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 753
length of database: 12,740,198
effective HSP length: 82
effective length of database: 10,462,238
effective search space used: 2500474882
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)