Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP11_F_J05
         (924 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    31   0.23 
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    31   0.23 

>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 31.1 bits (67), Expect = 0.23
 Identities = 15/36 (41%), Positives = 15/36 (41%)
 Frame = -2

Query: 551 GGGKXXPPPXXRGXGXFXGGXGXGPXKKXPXXXGGG 444
           GGG   PPP   G G F G  G G         GGG
Sbjct: 194 GGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGG 229


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 31.1 bits (67), Expect = 0.23
 Identities = 15/37 (40%), Positives = 16/37 (43%)
 Frame = +1

Query: 442 PPPPXXXGFFFXGPXPXPPXKXPXPRXXGGGXXFPPP 552
           PPPP   G    GP P PP   P P    GG  +  P
Sbjct: 762 PPPPPPPGVAGAGPPPPPP---PPPAVSAGGSRYYAP 795



 Score = 27.9 bits (59), Expect = 2.1
 Identities = 17/43 (39%), Positives = 17/43 (39%), Gaps = 1/43 (2%)
 Frame = +1

Query: 436 KXPPPPXXXGFFFXGPXPXP-PXKXPXPRXXGGGXXFPPPXGG 561
           K PPPP         P P P P   P P    GG   PPP  G
Sbjct: 730 KSPPPPPPAVIV---PTPAPAPIPVPPPAPIMGGPPPPPPPPG 769



 Score = 26.2 bits (55), Expect = 6.5
 Identities = 20/62 (32%), Positives = 23/62 (37%), Gaps = 7/62 (11%)
 Frame = +1

Query: 442 PPPPXXXGFFFXGPXPXPPXKXPXPRXXGGGXXFPPP-------XGGXFFXPXXGGXPQK 600
           PPP    G    GP P PP     P   G G   PPP        G  ++ P     P+ 
Sbjct: 752 PPPAPIMG----GPPPPPPP----PGVAGAGPPPPPPPPPAVSAGGSRYYAPAPQAEPEP 803

Query: 601 KI 606
           KI
Sbjct: 804 KI 805


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,093,179
Number of Sequences: 5004
Number of extensions: 13330
Number of successful extensions: 37
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 467341524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)