Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP11_F_J04
(965 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF000193-3|AAB52890.1| 259|Caenorhabditis elegans Hypothetical ... 33 0.40
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 32 0.70
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 32 0.70
U41017-1|AAC48211.1| 343|Caenorhabditis elegans Hypothetical pr... 30 2.1
Z70284-9|CAA94280.1| 290|Caenorhabditis elegans Hypothetical pr... 30 2.8
U41557-2|AAA83301.1| 309|Caenorhabditis elegans Hypothetical pr... 30 2.8
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 30 2.8
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 30 2.8
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 30 2.8
U64609-1|AAB04598.1| 405|Caenorhabditis elegans Sperm-specific ... 29 3.7
AF045646-2|AAK29827.1| 371|Caenorhabditis elegans Collagen prot... 29 3.7
U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical pr... 29 5.0
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 29 5.0
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 29 5.0
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 29 5.0
U41543-12|AAZ91345.1| 401|Caenorhabditis elegans Groundhog (hed... 29 6.5
AF098500-3|ABD94103.1| 774|Caenorhabditis elegans Temporarily a... 28 8.7
AF098500-2|AAC67399.2| 996|Caenorhabditis elegans Temporarily a... 28 8.7
>AF000193-3|AAB52890.1| 259|Caenorhabditis elegans Hypothetical
protein T20B6.3 protein.
Length = 259
Score = 32.7 bits (71), Expect = 0.40
Identities = 20/55 (36%), Positives = 22/55 (40%)
Frame = -3
Query: 837 GXXYSGYRXGXXTGGGPGGXFXXGKGVXXFLXPXGVSPLXXXGGGFXXGXLXGGG 673
G + GY G GGG GG G G F G + GGG G GGG
Sbjct: 159 GGDFGGYGGGGMGGGGYGGGGDGGYGGGGF----GGGGMGGYGGGMGGGGYGGGG 209
Score = 28.7 bits (61), Expect = 6.5
Identities = 18/55 (32%), Positives = 20/55 (36%)
Frame = -3
Query: 837 GXXYSGYRXGXXTGGGPGGXFXXGKGVXXFLXPXGVSPLXXXGGGFXXGXLXGGG 673
G G G GGG GG G G + G GGG+ G GGG
Sbjct: 194 GGYGGGMGGGGYGGGGMGGGGYGGGGDGGYGPSGGYGGGYGPGGGYGMGGGGGGG 248
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 31.9 bits (69), Expect = 0.70
Identities = 18/50 (36%), Positives = 18/50 (36%)
Frame = +2
Query: 674 PPPXNXPXXKPPPXXKRGETPXGXKKXXTPFPXXXXPPGPPPVXXPXRYP 823
P P P PPP R P P P P G PP P RYP
Sbjct: 308 PGPPGMPGMPPPPPPSRFGPPGMGGMPPPPPPGMRYPGGMPP-PPPPRYP 356
Score = 30.7 bits (66), Expect = 1.6
Identities = 20/57 (35%), Positives = 21/57 (36%), Gaps = 7/57 (12%)
Frame = +2
Query: 674 PPPXNXPXXKPPPXXKRGETPXG---XKKXXTPFPXXXXPPG----PPPVXXPXRYP 823
PPP + PPP G TP P P PPG PPP RYP
Sbjct: 288 PPPPSSGMWPPPPPPPPGRTPGPPGMPGMPPPPPPSRFGPPGMGGMPPPPPPGMRYP 344
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 31.9 bits (69), Expect = 0.70
Identities = 18/50 (36%), Positives = 18/50 (36%)
Frame = +2
Query: 674 PPPXNXPXXKPPPXXKRGETPXGXKKXXTPFPXXXXPPGPPPVXXPXRYP 823
P P P PPP R P P P P G PP P RYP
Sbjct: 318 PGPPGMPGMPPPPPPSRFGPPGMGGMPPPPPPGMRYPGGMPP-PPPPRYP 366
Score = 30.7 bits (66), Expect = 1.6
Identities = 20/57 (35%), Positives = 21/57 (36%), Gaps = 7/57 (12%)
Frame = +2
Query: 674 PPPXNXPXXKPPPXXKRGETPXG---XKKXXTPFPXXXXPPG----PPPVXXPXRYP 823
PPP + PPP G TP P P PPG PPP RYP
Sbjct: 298 PPPPSSGMWPPPPPPPPGRTPGPPGMPGMPPPPPPSRFGPPGMGGMPPPPPPGMRYP 354
>U41017-1|AAC48211.1| 343|Caenorhabditis elegans Hypothetical
protein T26C11.2 protein.
Length = 343
Score = 30.3 bits (65), Expect = 2.1
Identities = 17/51 (33%), Positives = 20/51 (39%)
Frame = +2
Query: 674 PPPXNXPXXKPPPXXKRGETPXGXKKXXTPFPXXXXPPGPPPVXXPXRYPE 826
P P P KP P K P K PFP P P P+ P +P+
Sbjct: 166 PFPNPMPFPKPMPKPKPKPKPM-PKHKPKPFPKPMLFPKPMPIPKPMPFPK 215
Score = 28.7 bits (61), Expect = 6.5
Identities = 16/49 (32%), Positives = 19/49 (38%)
Frame = +2
Query: 680 PXNXPXXKPPPXXKRGETPXGXKKXXTPFPXXXXPPGPPPVXXPXRYPE 826
P P KP P K P K PFP P P P+ P +P+
Sbjct: 202 PKPMPIPKPMPFPKPMPKPM-PKHKPKPFPKPMLFPKPMPIPKPMPFPK 249
Score = 28.3 bits (60), Expect = 8.7
Identities = 16/51 (31%), Positives = 18/51 (35%)
Frame = +2
Query: 674 PPPXNXPXXKPPPXXKRGETPXGXKKXXTPFPXXXXPPGPPPVXXPXRYPE 826
P P + P KP P K P PFP P P P P P+
Sbjct: 10 PKPKSEPFPKPMPKSKPKSEPF---PSPMPFPKPMPKPKPKPKPMPKHKPK 57
Score = 28.3 bits (60), Expect = 8.7
Identities = 17/51 (33%), Positives = 19/51 (37%)
Frame = +2
Query: 674 PPPXNXPXXKPPPXXKRGETPXGXKKXXTPFPXXXXPPGPPPVXXPXRYPE 826
P P P KP P K P K PFP P P P P +P+
Sbjct: 30 PFPSPMPFPKPMPKPKPKPKPM-PKHKPKPFPKPMLFPKPMPKHKPKPFPK 79
>Z70284-9|CAA94280.1| 290|Caenorhabditis elegans Hypothetical
protein K07F5.11 protein.
Length = 290
Score = 29.9 bits (64), Expect = 2.8
Identities = 17/46 (36%), Positives = 18/46 (39%)
Frame = -3
Query: 810 GXXTGGGPGGXFXXGKGVXXFLXPXGVSPLXXXGGGFXXGXLXGGG 673
G GG G F G+GV G S GGG G GGG
Sbjct: 213 GGGGGGATSGYFGVGQGVMGGGGAVGQSAYFGVGGGAAGGAKSGGG 258
>U41557-2|AAA83301.1| 309|Caenorhabditis elegans Hypothetical
protein C50F7.5 protein.
Length = 309
Score = 29.9 bits (64), Expect = 2.8
Identities = 20/80 (25%), Positives = 25/80 (31%)
Frame = +2
Query: 572 PKXGXTPGKXXXGKXXKKAXNPKXGXXXDLXQXXPPPXNXPXXKPPPXXKRGETPXGXKK 751
P +PG + K + P G + P P P P +R P G
Sbjct: 206 PSGPPSPGPVDPSEDPKPSEPPSPGPVDPSDEPSPSDPPGPPGPPGPPTRRPPGPPGPPT 265
Query: 752 XXTPFPXXXXPPGPPPVXXP 811
P PPGPP P
Sbjct: 266 RRPP-----GPPGPPTRRPP 280
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 29.9 bits (64), Expect = 2.8
Identities = 16/45 (35%), Positives = 16/45 (35%), Gaps = 3/45 (6%)
Frame = +2
Query: 674 PPPXNXPXXK---PPPXXKRGETPXGXKKXXTPFPXXXXPPGPPP 799
PPP P PPP G P P P PP PPP
Sbjct: 730 PPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPP 774
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 29.9 bits (64), Expect = 2.8
Identities = 16/45 (35%), Positives = 16/45 (35%), Gaps = 3/45 (6%)
Frame = +2
Query: 674 PPPXNXPXXK---PPPXXKRGETPXGXKKXXTPFPXXXXPPGPPP 799
PPP P PPP G P P P PP PPP
Sbjct: 730 PPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPP 774
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 29.9 bits (64), Expect = 2.8
Identities = 16/45 (35%), Positives = 16/45 (35%), Gaps = 3/45 (6%)
Frame = +2
Query: 674 PPPXNXPXXK---PPPXXKRGETPXGXKKXXTPFPXXXXPPGPPP 799
PPP P PPP G P P P PP PPP
Sbjct: 313 PPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPP 357
>U64609-1|AAB04598.1| 405|Caenorhabditis elegans Sperm-specific
family, class qprotein 2 protein.
Length = 405
Score = 29.5 bits (63), Expect = 3.7
Identities = 19/49 (38%), Positives = 21/49 (42%), Gaps = 3/49 (6%)
Frame = -3
Query: 810 GXXTGGGPG---GXFXXGKGVXXFLXPXGVSPLXXXGGGFXXGXLXGGG 673
G +GGG G G F G+GV G S GGG G GGG
Sbjct: 325 GSMSGGGGGATSGYFGVGQGVMGGGGAVGQSAYFGVGGGAAGGAKTGGG 373
>AF045646-2|AAK29827.1| 371|Caenorhabditis elegans Collagen protein
103 protein.
Length = 371
Score = 29.5 bits (63), Expect = 3.7
Identities = 19/55 (34%), Positives = 21/55 (38%)
Frame = -3
Query: 837 GXXYSGYRXGXXTGGGPGGXFXXGKGVXXFLXPXGVSPLXXXGGGFXXGXLXGGG 673
G Y G G GGG GG G G + G GGG+ G GGG
Sbjct: 77 GGGYGGGHGGAAVGGGYGGAVGGGGG-GGYGGGHGGGHGGAVGGGYGGGGGGGGG 130
>U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical
protein R04E5.8a protein.
Length = 997
Score = 29.1 bits (62), Expect = 5.0
Identities = 14/42 (33%), Positives = 16/42 (38%), Gaps = 1/42 (2%)
Frame = +2
Query: 674 PPPXNXPXXKPPPXXKRGETPXGXKKXXTP-FPXXXXPPGPP 796
PPP P P P + TP + P P PP PP
Sbjct: 155 PPPRRPPMTPPSPQRRPPRTPPSPEPRNPPRTPPSPIPPPPP 196
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 29.1 bits (62), Expect = 5.0
Identities = 17/51 (33%), Positives = 20/51 (39%)
Frame = +2
Query: 674 PPPXNXPXXKPPPXXKRGETPXGXKKXXTPFPXXXXPPGPPPVXXPXRYPE 826
PPP PPP KR + P +P P P G PP P + E
Sbjct: 321 PPPAGTGSPPPPPRQKR-QAPERSPPTGSP-PTGSPPTGRPPRGGPGKSSE 369
Score = 28.7 bits (61), Expect = 6.5
Identities = 17/54 (31%), Positives = 17/54 (31%)
Frame = +2
Query: 677 PPXNXPXXKPPPXXKRGETPXGXKKXXTPFPXXXXPPGPPPVXXPXRYPEYXXP 838
PP P PP G P P P PP PPP P P P
Sbjct: 237 PPPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPP-PPPTGSPPPPPAGGSP 289
Score = 28.7 bits (61), Expect = 6.5
Identities = 15/42 (35%), Positives = 15/42 (35%)
Frame = +2
Query: 674 PPPXNXPXXKPPPXXKRGETPXGXKKXXTPFPXXXXPPGPPP 799
PPP PPP P G P P PP PPP
Sbjct: 264 PPPPRTGSPPPPPTGSPPPPPAGGSP---PPPRAGSPPPPPP 302
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 29.1 bits (62), Expect = 5.0
Identities = 17/51 (33%), Positives = 20/51 (39%)
Frame = +2
Query: 674 PPPXNXPXXKPPPXXKRGETPXGXKKXXTPFPXXXXPPGPPPVXXPXRYPE 826
PPP PPP KR + P +P P P G PP P + E
Sbjct: 342 PPPAGTGSPPPPPRQKR-QAPERSPPTGSP-PTGSPPTGRPPRGGPGKSSE 390
Score = 28.7 bits (61), Expect = 6.5
Identities = 17/54 (31%), Positives = 17/54 (31%)
Frame = +2
Query: 677 PPXNXPXXKPPPXXKRGETPXGXKKXXTPFPXXXXPPGPPPVXXPXRYPEYXXP 838
PP P PP G P P P PP PPP P P P
Sbjct: 258 PPPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPP-PPPTGSPPPPPAGGSP 310
Score = 28.7 bits (61), Expect = 6.5
Identities = 15/42 (35%), Positives = 15/42 (35%)
Frame = +2
Query: 674 PPPXNXPXXKPPPXXKRGETPXGXKKXXTPFPXXXXPPGPPP 799
PPP PPP P G P P PP PPP
Sbjct: 285 PPPPRTGSPPPPPTGSPPPPPAGGSP---PPPRAGSPPPPPP 323
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 29.1 bits (62), Expect = 5.0
Identities = 17/51 (33%), Positives = 20/51 (39%)
Frame = +2
Query: 674 PPPXNXPXXKPPPXXKRGETPXGXKKXXTPFPXXXXPPGPPPVXXPXRYPE 826
PPP PPP KR + P +P P P G PP P + E
Sbjct: 327 PPPAGTGSPPPPPRQKR-QAPERSPPTGSP-PTGSPPTGRPPRGGPGKSSE 375
Score = 28.7 bits (61), Expect = 6.5
Identities = 17/54 (31%), Positives = 17/54 (31%)
Frame = +2
Query: 677 PPXNXPXXKPPPXXKRGETPXGXKKXXTPFPXXXXPPGPPPVXXPXRYPEYXXP 838
PP P PP G P P P PP PPP P P P
Sbjct: 243 PPPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPP-PPPTGSPPPPPAGGSP 295
Score = 28.7 bits (61), Expect = 6.5
Identities = 15/42 (35%), Positives = 15/42 (35%)
Frame = +2
Query: 674 PPPXNXPXXKPPPXXKRGETPXGXKKXXTPFPXXXXPPGPPP 799
PPP PPP P G P P PP PPP
Sbjct: 270 PPPPRTGSPPPPPTGSPPPPPAGGSP---PPPRAGSPPPPPP 308
>U41543-12|AAZ91345.1| 401|Caenorhabditis elegans Groundhog
(hedgehog-like family)protein 7 protein.
Length = 401
Score = 28.7 bits (61), Expect = 6.5
Identities = 15/48 (31%), Positives = 18/48 (37%), Gaps = 3/48 (6%)
Frame = +2
Query: 677 PPXNXPXXKPPPXXKRGETP--XGXKKXXTPFPXXXXP-PGPPPVXXP 811
PP P KP P ++ P P+P P P PPP P
Sbjct: 26 PPPPPPPPKPAPYVEQSAQPQQTAPPPPPAPYPQQAVPAPAPPPAPYP 73
>AF098500-3|ABD94103.1| 774|Caenorhabditis elegans Temporarily
assigned gene nameprotein 343, isoform b protein.
Length = 774
Score = 28.3 bits (60), Expect = 8.7
Identities = 17/51 (33%), Positives = 17/51 (33%)
Frame = +2
Query: 677 PPXNXPXXKPPPXXKRGETPXGXKKXXTPFPXXXXPPGPPPVXXPXRYPEY 829
PP P PP K P K P P PP PP P P Y
Sbjct: 76 PPPPLPLSNPPA--KPTPPPPPPKPTIRPPPIPASPPPRPPASEPVGIPLY 124
>AF098500-2|AAC67399.2| 996|Caenorhabditis elegans Temporarily
assigned gene nameprotein 343, isoform a protein.
Length = 996
Score = 28.3 bits (60), Expect = 8.7
Identities = 17/51 (33%), Positives = 17/51 (33%)
Frame = +2
Query: 677 PPXNXPXXKPPPXXKRGETPXGXKKXXTPFPXXXXPPGPPPVXXPXRYPEY 829
PP P PP K P K P P PP PP P P Y
Sbjct: 298 PPPPLPLSNPPA--KPTPPPPPPKPTIRPPPIPASPPPRPPASEPVGIPLY 346
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,173,134
Number of Sequences: 27780
Number of extensions: 180954
Number of successful extensions: 966
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 450
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 840
length of database: 12,740,198
effective HSP length: 82
effective length of database: 10,462,238
effective search space used: 2500474882
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -