Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP11_F_J02
         (923 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC106.17c |cys2||O-acetyltransferase |Schizosaccharomyces pomb...    29   1.2  
SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C |Schizosacchar...    28   1.6  
SPBC28F2.11 |||INO80 complex subunit |Schizosaccharomyces pombe|...    27   2.8  
SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ...    26   8.6  
SPAC22H10.12c |gdi1|sec19|GDP dissociation inhibitor Gdi1 |Schiz...    26   8.6  

>SPBC106.17c |cys2||O-acetyltransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 504

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -2

Query: 511 IYIQSCVDTFSVHACHQRSVASSRKK 434
           +YI   +D   + A HQRS++ +RKK
Sbjct: 347 LYISKAMDMHDMSASHQRSLSENRKK 372


>SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 988

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 17/62 (27%), Positives = 28/62 (45%)
 Frame = +1

Query: 139 KRNENEIQHFYFVDCFVSANFVREKFADRQRAKGGFKC*RLKKEKITLQVSLGSVRMARH 318
           K+N   +  F F+      NF +   A+ +  K  +    LKKE I     L S++  +H
Sbjct: 655 KKNRVTLDDFTFLAVLGKGNFGKVMLAEYKVNKKFYAIKVLKKEAILKNEELESLKTEKH 714

Query: 319 IF 324
           +F
Sbjct: 715 VF 716


>SPBC28F2.11 |||INO80 complex subunit |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 310

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = -3

Query: 489 TPSRYMHATNDPSLHREKK*PREQNFHTSITS 394
           +P + + + N PS  REKK  R+ +  +SIT+
Sbjct: 271 SPDKIVSSPNPPSAKREKKKRRKSSMSSSITT 302


>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1854

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 23/95 (24%), Positives = 42/95 (44%), Gaps = 13/95 (13%)
 Frame = +2

Query: 158 FNIFILLTVLL-VQILFVRSS-PIDNEQKEDLSVDV------LRRKRSLFRFRWEVSGWH 313
           +NIFI + ++L   +L +RS  P D  Q  D  + V      L     ++ F +   G  
Sbjct: 187 YNIFIFVVIVLHAVLLMIRSDDPHDKSQTIDYLIIVIGILYTLEMLLKIYLFGFLYDGSS 246

Query: 314 DIFSFVWLHIM*NLQ-----RHNWERMPFIIILVI 403
             + F+  +     +     RH+W R+ F+ I+ +
Sbjct: 247 SFYDFINSYTKKTPRTMSYLRHSWNRVDFVAIVAL 281


>SPAC22H10.12c |gdi1|sec19|GDP dissociation inhibitor Gdi1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 440

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = +3

Query: 288 FVGKCPDGTTYFPSCGCISCKIYKDITGSE 377
           ++ K  D T++F +  C    IYK +TG++
Sbjct: 399 YISKSVDATSHFETLTCDVRDIYKRMTGTD 428


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,506,065
Number of Sequences: 5004
Number of extensions: 46408
Number of successful extensions: 131
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 467341524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)