Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP11_F_J01
(972 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 32 0.11
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 30 0.57
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo... 28 1.7
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 28 2.3
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 27 3.0
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 27 5.3
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 26 9.2
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 32.3 bits (70), Expect = 0.11
Identities = 17/50 (34%), Positives = 17/50 (34%), Gaps = 3/50 (6%)
Frame = +1
Query: 673 PPPPXXXXGGGGVXQXXXPPPXKX---PKKXPPPPXXGGXXPPPXVKKXP 813
PPPP PPP P PPPP G PPP P
Sbjct: 734 PPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783
Score = 27.9 bits (59), Expect = 2.3
Identities = 10/20 (50%), Positives = 10/20 (50%)
Frame = +2
Query: 674 PPPPXXGXGGGGXXKXXPPP 733
PPPP G G G PPP
Sbjct: 763 PPPPPPGVAGAGPPPPPPPP 782
Score = 27.5 bits (58), Expect = 3.0
Identities = 16/41 (39%), Positives = 16/41 (39%), Gaps = 2/41 (4%)
Frame = +1
Query: 727 PPPXKXPKKXPPP-PXXGG-XXPPPXVKKXPXXPPXNXPXP 843
P P P PPP P GG PPP PP P P
Sbjct: 742 PTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPP 782
Score = 27.1 bits (57), Expect = 4.0
Identities = 11/18 (61%), Positives = 11/18 (61%)
Frame = +3
Query: 480 PPPPXGXGGXFLGPPPXP 533
PPPP G G GPPP P
Sbjct: 764 PPPPPGVAGA--GPPPPP 779
Score = 26.2 bits (55), Expect = 7.0
Identities = 17/57 (29%), Positives = 18/57 (31%)
Frame = +2
Query: 668 KXPPPPXXGXGGGGXXKXXPPPXXKXPKKXXPXLXXGGXPPPPGXKXXPXSPPKTPP 838
K PPPP P P P GG PPPP + P PP
Sbjct: 730 KSPPPPPPAV-------IVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPP 779
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 29.9 bits (64), Expect = 0.57
Identities = 14/38 (36%), Positives = 14/38 (36%)
Frame = +1
Query: 730 PPXKXPKKXPPPPXXGGXXPPPXVKKXPXXPPXNXPXP 843
PP PPPP PPP P PP P P
Sbjct: 1699 PPQMSAPTPPPPPM--SVPPPPSAPPMPAGPPSAPPPP 1734
>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1224
Score = 28.3 bits (60), Expect = 1.7
Identities = 13/40 (32%), Positives = 14/40 (35%)
Frame = +1
Query: 673 PPPPXXXXGGGGVXQXXXPPPXKXPKKXPPPPXXGGXXPP 792
PPPP PPP K + PP G PP
Sbjct: 908 PPPPPTASMTASAPAIASPPPPKVGETYHPPTASGTRVPP 947
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 27.9 bits (59), Expect = 2.3
Identities = 21/75 (28%), Positives = 21/75 (28%), Gaps = 1/75 (1%)
Frame = +1
Query: 655 PXXXXXPPPPXXXXGGGGVXQXXXPPPXKXPK-KXPPPPXXGGXXPPPXVKKXPXXPPXN 831
P PP P V PP P PP P G PP K PP
Sbjct: 1115 PAPSGAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSG--APPVPKPSVAAPPVP 1172
Query: 832 XPXPXFXPRPXHXXG 876
P P P G
Sbjct: 1173 APSSGIPPVPKPAAG 1187
Score = 26.6 bits (56), Expect = 5.3
Identities = 16/61 (26%), Positives = 16/61 (26%)
Frame = +1
Query: 655 PXXXXXPPPPXXXXGGGGVXQXXXPPPXKXPKKXPPPPXXGGXXPPPXVKKXPXXPPXNX 834
P PP P V PP P PP PP K PP
Sbjct: 1134 PVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPP 1193
Query: 835 P 837
P
Sbjct: 1194 P 1194
Score = 25.8 bits (54), Expect = 9.2
Identities = 14/39 (35%), Positives = 14/39 (35%), Gaps = 2/39 (5%)
Frame = +1
Query: 727 PPPXKXPKKXPP--PPXXGGXXPPPXVKKXPXXPPXNXP 837
PP K PP PP P P V P PP P
Sbjct: 1179 PPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAP 1217
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 27.5 bits (58), Expect = 3.0
Identities = 17/57 (29%), Positives = 18/57 (31%), Gaps = 2/57 (3%)
Frame = +2
Query: 674 PPPPXXGXGGGGXXKXXPPPXXKXPKKXXPXL--XXGGXPPPPGXKXXPXSPPKTPP 838
PPPP G PP P P G PPP +PP PP
Sbjct: 338 PPPPPPRSNAAGSI-PLPPQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPP 393
Score = 27.5 bits (58), Expect = 3.0
Identities = 15/47 (31%), Positives = 15/47 (31%), Gaps = 2/47 (4%)
Frame = +1
Query: 727 PP--PXKXPKKXPPPPXXGGXXPPPXVKKXPXXPPXNXPXPXFXPRP 861
PP P P PP G PP P PP P P P
Sbjct: 424 PPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLP 470
Score = 27.1 bits (57), Expect = 4.0
Identities = 19/66 (28%), Positives = 22/66 (33%), Gaps = 5/66 (7%)
Frame = +2
Query: 674 PPPPXXGXG----GGGXXKXXPPPXXKXPKKXXPXLXXGGXP-PPPGXKXXPXSPPKTPP 838
PPP G G G PP P+ G P PP G P PP++ P
Sbjct: 315 PPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAA----GSIPLPPQGRSAPPPPPPRSAP 370
Query: 839 XXXXAP 856
P
Sbjct: 371 STGRQP 376
Score = 27.1 bits (57), Expect = 4.0
Identities = 15/46 (32%), Positives = 15/46 (32%), Gaps = 2/46 (4%)
Frame = +1
Query: 730 PPXKXPKKXPP--PPXXGGXXPPPXVKKXPXXPPXNXPXPXFXPRP 861
PP P PP PP PP P PP P P P
Sbjct: 415 PPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLP 460
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 26.6 bits (56), Expect = 5.3
Identities = 14/33 (42%), Positives = 14/33 (42%)
Frame = +1
Query: 727 PPPXKXPKKXPPPPXXGGXXPPPXVKKXPXXPP 825
PPP P PPPP PP VKK P
Sbjct: 14 PPPGFEPPSQPPPPP-----PPGYVKKRKNKTP 41
Score = 26.2 bits (55), Expect = 7.0
Identities = 9/18 (50%), Positives = 10/18 (55%)
Frame = +2
Query: 785 PPPPGXKXXPXSPPKTPP 838
PPPPG + PP PP
Sbjct: 13 PPPPGFEPPSQPPPPPPP 30
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 25.8 bits (54), Expect = 9.2
Identities = 15/36 (41%), Positives = 15/36 (41%)
Frame = -1
Query: 834 GVXGGXXGXFFXPGGGGXPPXXRXGXXFFGXFXXGG 727
G GG G F GG G PP G FG F G
Sbjct: 184 GHNGGGFGGF--GGGSGGPPPGPGGFGGFGGFGGEG 217
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,055,550
Number of Sequences: 5004
Number of extensions: 31777
Number of successful extensions: 170
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 499296500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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