Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP11_F_J01
         (972 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ438610-1|CAD27473.1|  838|Anopheles gambiae putative microtubu...    31   0.052
DQ655702-1|ABG45862.1|  889|Anopheles gambiae Jxc1 protein.            27   0.85 
AJ439060-4|CAD27755.1|  151|Anopheles gambiae putative sRNP prot...    26   2.0  
DQ303468-1|ABC18327.1| 1115|Anopheles gambiae putative methopren...    24   6.0  

>AJ438610-1|CAD27473.1|  838|Anopheles gambiae putative microtubule
           binding protein protein.
          Length = 838

 Score = 31.1 bits (67), Expect = 0.052
 Identities = 25/73 (34%), Positives = 25/73 (34%), Gaps = 5/73 (6%)
 Frame = +1

Query: 673 PPPPXXXXGGGGVXQXXXPPPXKXPKKXPPPPXXGGXXP-PPXV--KKXPXXPPXNXP-- 837
           PP P      G V      PP       P PP  GG  P PP V     P  PP   P  
Sbjct: 186 PPGPQMMRPPGNVG-----PPRTGTPTQPQPPRPGGMYPQPPGVPMPMRPQMPPGAVPGM 240

Query: 838 XPXFXPRPXHXXG 876
            P   PRP    G
Sbjct: 241 QPGMQPRPPSAQG 253



 Score = 28.3 bits (60), Expect = 0.37
 Identities = 15/43 (34%), Positives = 17/43 (39%)
 Frame = +1

Query: 733 PXKXPKKXPPPPXXGGXXPPPXVKKXPXXPPXNXPXPXFXPRP 861
           P   P   P PP   G   PP + +    PP   P P   PRP
Sbjct: 238 PGMQPGMQPRPPSAQGMQRPPMMGQ---PPPIRPPNPMGGPRP 277


>DQ655702-1|ABG45862.1|  889|Anopheles gambiae Jxc1 protein.
          Length = 889

 Score = 27.1 bits (57), Expect = 0.85
 Identities = 20/87 (22%), Positives = 25/87 (28%), Gaps = 5/87 (5%)
 Frame = +2

Query: 614 PPXXGGXXXKXFFSQXXXKXPPPPXXGXGGGGXXKXXPPPXXK-----XPKKXXPXLXXG 778
           PP   G   +          PPPP  G       +  PPP         P          
Sbjct: 512 PPHGAGYDGRDLTGGPLGPPPPPPPGGAVLNIPPQFLPPPLNLLRAPFFPLNPAQLRFPA 571

Query: 779 GXPPPPGXKXXPXSPPKTPPXXXXAPV 859
           G P  P  +  P  PP  P     +P+
Sbjct: 572 GFPNLPNAQPPPAPPPPPPMGPPPSPL 598



 Score = 24.2 bits (50), Expect = 6.0
 Identities = 11/33 (33%), Positives = 12/33 (36%)
 Frame = +1

Query: 715 QXXXPPPXKXPKKXPPPPXXGGXXPPPXVKKXP 813
           Q    PP   P   PP P  GG    P   + P
Sbjct: 580 QPPPAPPPPPPMGPPPSPLAGGPLGGPAGSRPP 612



 Score = 23.8 bits (49), Expect = 7.9
 Identities = 9/16 (56%), Positives = 9/16 (56%)
 Frame = +3

Query: 480 PPPPXGXGGXFLGPPP 527
           PPPP   GG  L  PP
Sbjct: 530 PPPPPPPGGAVLNIPP 545



 Score = 23.8 bits (49), Expect = 7.9
 Identities = 11/35 (31%), Positives = 12/35 (34%)
 Frame = +1

Query: 733 PXKXPKKXPPPPXXGGXXPPPXVKKXPXXPPXNXP 837
           P   P   PPPP   G  P P        P  + P
Sbjct: 577 PNAQPPPAPPPPPPMGPPPSPLAGGPLGGPAGSRP 611


>AJ439060-4|CAD27755.1|  151|Anopheles gambiae putative sRNP
           protein.
          Length = 151

 Score = 25.8 bits (54), Expect = 2.0
 Identities = 15/57 (26%), Positives = 17/57 (29%)
 Frame = +1

Query: 655 PXXXXXPPPPXXXXGGGGVXQXXXPPPXKXPKKXPPPPXXGGXXPPPXVKKXPXXPP 825
           P     PP        G +      PP       P PP   G  PPP +      PP
Sbjct: 74  PNISIPPPTMNMPPRPGMIPGMPGAPPLLMGPNGPLPPPMMGMRPPPMMVPTMGMPP 130


>DQ303468-1|ABC18327.1| 1115|Anopheles gambiae putative
           methoprene-tolerant protein protein.
          Length = 1115

 Score = 24.2 bits (50), Expect = 6.0
 Identities = 10/28 (35%), Positives = 13/28 (46%)
 Frame = +2

Query: 680 PPXXGXGGGGXXKXXPPPXXKXPKKXXP 763
           PP  G  GGG     P P  + P++  P
Sbjct: 142 PPELGMYGGGCYGSPPVPWYQLPQQQQP 169


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 610,564
Number of Sequences: 2352
Number of extensions: 12216
Number of successful extensions: 41
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36
length of database: 563,979
effective HSP length: 65
effective length of database: 411,099
effective search space used: 106063542
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)