Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP11_F_I20
         (917 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1037 - 23438205-23441219,23443509-23444513,23444627-23446708     33   0.32 
06_01_0185 - 1437693-1437834,1437969-1438078,1438214-1438264,143...    31   1.7  
03_02_0916 + 12364557-12364906,12365485-12365592,12365731-12366343     29   6.8  
10_08_0940 - 21708557-21708733,21709058-21709142,21709330-217095...    28   9.0  
06_01_1042 + 8187536-8187616,8187713-8188315                           28   9.0  

>07_03_1037 - 23438205-23441219,23443509-23444513,23444627-23446708
          Length = 2033

 Score = 33.1 bits (72), Expect = 0.32
 Identities = 16/44 (36%), Positives = 20/44 (45%)
 Frame = +2

Query: 539  LTSITKIDAQVRGGETRQDYKDTRRFPPGKLPRALSCSXPAAYR 670
            L  IT +D    GG  R      +R PP +L R +S   P  YR
Sbjct: 1462 LGEITTVDVNETGGGARSSLSFRQRMPPPRLQRCVSGILPVVYR 1505


>06_01_0185 -
           1437693-1437834,1437969-1438078,1438214-1438264,
           1438877-1439122,1439244-1439315,1439614-1439648,
           1439755-1439845,1440546-1440610,1440733-1440813,
           1441020-1441137,1441535-1441627,1441865-1441997,
           1442471-1442503,1443264-1443343,1443444-1443549,
           1443621-1443795,1443884-1443980,1444819-1445251,
           1445329-1445459,1446052-1446341,1446429-1447002
          Length = 1051

 Score = 30.7 bits (66), Expect = 1.7
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +1

Query: 562 RSSQRWRNPTGL*RYQAFPPWKAPSCAL 645
           RS +RWR+   +  + AF    APSCAL
Sbjct: 321 RSRRRWRHAAAISSFSAFVAENAPSCAL 348


>03_02_0916 + 12364557-12364906,12365485-12365592,12365731-12366343
          Length = 356

 Score = 28.7 bits (61), Expect = 6.8
 Identities = 22/56 (39%), Positives = 25/56 (44%), Gaps = 4/56 (7%)
 Frame = +2

Query: 341 PLPRSLTRCARSF--GCGERYQLTQRR*YGYPQNQGITQ--ERTCEQKASKRPGTV 496
           P PRS  RC      GCG R Q TQR     P N  IT   E TC   ++  P  +
Sbjct: 150 PYPRSYYRCTHKLDQGCGARRQ-TQRC-EADPSNYDITYYGEHTCRDPSTIIPTAI 203


>10_08_0940 -
           21708557-21708733,21709058-21709142,21709330-21709551,
           21710640-21710815,21711883-21711946,21712433-21712507,
           21715114-21715199,21715297-21716715
          Length = 767

 Score = 28.3 bits (60), Expect = 9.0
 Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 3/31 (9%)
 Frame = +2

Query: 290 NESAN---ARGEAVCVLGALPLPRSLTRCAR 373
           +ESAN   AR EAV  +G +P+   L RC+R
Sbjct: 434 DESANVDAARSEAVMRVGGIPMLLDLARCSR 464


>06_01_1042 + 8187536-8187616,8187713-8188315
          Length = 227

 Score = 28.3 bits (60), Expect = 9.0
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = -1

Query: 707 RHASRREKGGQVSGKRQXRNRRAHEGAFQGGNAWY 603
           R A   E+G +  G R+ R RR   G+   G +W+
Sbjct: 74  RPAGEEEEGRRAGGWRRRRRRRQRRGSRSLGGSWW 108


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,739,253
Number of Sequences: 37544
Number of extensions: 427917
Number of successful extensions: 1168
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1168
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2612387020
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)