Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP11_F_I18
(886 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0473 - 17906802-17907964,17908175-17908871,17910323-17910784 34 0.13
04_03_0625 + 18126856-18127444,18127561-18127725,18127827-18127834 33 0.30
02_05_0005 - 24890239-24891419,24891524-24891694,24891810-24892704 31 0.93
12_02_1105 + 26128108-26129032,26129535-26129663,26129924-26131104 31 1.2
12_02_1103 + 26116614-26117607,26118060-26118242,26118344-26119518 30 2.1
11_06_0111 - 20217128-20217198,20217648-20217770,20217924-202186... 30 2.8
09_02_0533 - 10325681-10326211,10326260-10326328,10326758-103268... 29 3.8
03_02_0635 + 9994327-9994644,9995510-9995706,9995806-9995941,999... 29 3.8
03_01_0216 - 1700223-1700666,1700749-1700860,1701534-1701837,170... 29 3.8
08_02_1119 - 24436942-24437565,24438380-24438502,24439264-24439626 29 5.0
09_04_0475 - 17913982-17914772,17914830-17915156,17915323-179154... 29 6.6
02_05_0004 - 24880826-24882033,24882106-24882276,24882360-24883203 29 6.6
01_03_0306 + 14875755-14876822 29 6.6
10_02_0062 - 4814139-4814176,4814571-4815627 28 8.7
08_01_0400 - 3538570-3540363,3540895-3541639,3543688-3544007 28 8.7
07_03_1686 + 28657337-28658668 28 8.7
>09_04_0473 - 17906802-17907964,17908175-17908871,17910323-17910784
Length = 773
Score = 34.3 bits (75), Expect = 0.13
Identities = 16/43 (37%), Positives = 24/43 (55%)
Frame = -3
Query: 806 NIXXFACIALDSVCVDAPSSRGXECKTDVAGQQXSPILLTGEE 678
N +AC++ +S CVDA + RG CK G + +P + G E
Sbjct: 267 NRTSYACVSSNSYCVDATNGRGYRCKCS-DGYKGNPYITDGCE 308
>04_03_0625 + 18126856-18127444,18127561-18127725,18127827-18127834
Length = 253
Score = 33.1 bits (72), Expect = 0.30
Identities = 18/51 (35%), Positives = 25/51 (49%)
Frame = -3
Query: 794 FACIALDSVCVDAPSSRGXECKTDVAGQQXSPILLTGEEXXXXXXXXXVYH 642
+ACI+ +SVCV++ S G C G Q +P LL G + YH
Sbjct: 159 YACISSNSVCVNSSSGPGYICNC-THGYQGNPYLLHGCQDIDECEEHENYH 208
>02_05_0005 - 24890239-24891419,24891524-24891694,24891810-24892704
Length = 748
Score = 31.5 bits (68), Expect = 0.93
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = -3
Query: 806 NIXXFACIALDSVCVDAPSSRGXECKTDVAGQQXSPILLTG 684
N + C++ DS CVD+ + G C AG + +P LL G
Sbjct: 257 NATGYMCVSRDSECVDSRNGPGYLCNCS-AGFEGNPYLLDG 296
>12_02_1105 + 26128108-26129032,26129535-26129663,26129924-26131104
Length = 744
Score = 31.1 bits (67), Expect = 1.2
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = -3
Query: 794 FACIALDSVCVDAPSSRGXECKTDVAGQQXSPILLTG 684
+ACI+ +S C+DA + G C+ G + +P LL G
Sbjct: 271 YACISANSYCMDANNGPGYLCQCS-KGYEGNPYLLNG 306
>12_02_1103 + 26116614-26117607,26118060-26118242,26118344-26119518
Length = 783
Score = 30.3 bits (65), Expect = 2.1
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = -3
Query: 794 FACIALDSVCVDAPSSRGXECKTDVAGQQXSPILLTG 684
+AC++ +S CV A +S+G CK G + +P L G
Sbjct: 294 YACVSSNSKCVQASNSQGYLCKCS-EGYEGNPYLPKG 329
>11_06_0111 -
20217128-20217198,20217648-20217770,20217924-20218637,
20218874-20218915,20219025-20219820
Length = 581
Score = 29.9 bits (64), Expect = 2.8
Identities = 15/41 (36%), Positives = 20/41 (48%)
Frame = -3
Query: 806 NIXXFACIALDSVCVDAPSSRGXECKTDVAGQQXSPILLTG 684
N +AC A +S C+D PS G C G + +P L G
Sbjct: 224 NALSYACKATNSSCIDRPSRSGYLCNCS-QGYEGNPYLHGG 263
>09_02_0533 -
10325681-10326211,10326260-10326328,10326758-10326855,
10326968-10327117,10327848-10327976,10328063-10328999
Length = 637
Score = 29.5 bits (63), Expect = 3.8
Identities = 17/67 (25%), Positives = 25/67 (37%), Gaps = 3/67 (4%)
Frame = +3
Query: 282 CPDGLHFNPSVEWPAYP---CGYPVEVTCVGRGSIQPAQTTPDCPHQYGIFKHPNASPTN 452
C DG NP + + C P + +C G + P DCP Y + ++P
Sbjct: 297 CSDGYQGNPYIRGGCHDIDECKSPQDYSCYGNCNNTPGSHICDCPRGY---ERNASTPNG 353
Query: 453 CGQYRTC 473
C C
Sbjct: 354 CKDIDEC 360
>03_02_0635 +
9994327-9994644,9995510-9995706,9995806-9995941,
9996019-9996270,9996356-9996588,9996695-9996812,
9996884-9997036,9997126-9997212,9997407-9997697
Length = 594
Score = 29.5 bits (63), Expect = 3.8
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +3
Query: 207 NGYYKTDANCDTYIECRDYQATNMICPDGLHFNPSVEWP 323
+G+YK + C Y++ D+ CPDG F+P + P
Sbjct: 428 HGFYKANGGCG-YVKKPDFMMQT--CPDGNVFDPKADLP 463
>03_01_0216 -
1700223-1700666,1700749-1700860,1701534-1701837,
1702358-1702426,1702543-1702657,1702740-1702811,
1702918-1703016,1703148-1703219,1703394-1703465,
1704940-1705154,1705277-1705495,1705792-1707076,
1707270-1707398
Length = 1068
Score = 29.5 bits (63), Expect = 3.8
Identities = 27/84 (32%), Positives = 36/84 (42%)
Frame = -1
Query: 628 LPIASKGAGGQVKPKNFSASQEGTRSAQSQRLKSGLNASPGGHTMSKARPPTHVRYWPQL 449
+P AS+G G ++P F A+Q G QSQ G N P + RP L
Sbjct: 178 MPAASQG--GALQPTQF-ATQRGM---QSQPPSMGFNQQPPPSSTGFMRPTQPGAPAASL 231
Query: 448 VGEALGCLKMPYWCGQSGVVWAGW 377
G+ G ++P G G AGW
Sbjct: 232 QGQGPGINQVPLGGGSMGAP-AGW 254
>08_02_1119 - 24436942-24437565,24438380-24438502,24439264-24439626
Length = 369
Score = 29.1 bits (62), Expect = 5.0
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = +3
Query: 537 RCDWADLVPSCDAEKFLGFT 596
+CDW ++ C + FLGFT
Sbjct: 167 QCDWHSILKMCQVQGFLGFT 186
>09_04_0475 -
17913982-17914772,17914830-17915156,17915323-17915493,
17915583-17915824,17915862-17916049,17916184-17916253,
17916329-17916612
Length = 690
Score = 28.7 bits (61), Expect = 6.6
Identities = 9/26 (34%), Positives = 18/26 (69%)
Frame = -3
Query: 806 NIXXFACIALDSVCVDAPSSRGXECK 729
N+ +AC++ +S C+++ + RG CK
Sbjct: 217 NMSSYACVSNNSECLNSTNGRGYRCK 242
>02_05_0004 - 24880826-24882033,24882106-24882276,24882360-24883203
Length = 740
Score = 28.7 bits (61), Expect = 6.6
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Frame = -3
Query: 806 NIXXFACIALDSVCVDA--PSSRGXECKTDVAGQQXSPILLTG 684
N +AC++ +S CVD+ RG C AG +P LL G
Sbjct: 238 NASAYACVSANSECVDSRYGRGRGYLCNCS-AGYDGNPYLLDG 279
>01_03_0306 + 14875755-14876822
Length = 355
Score = 28.7 bits (61), Expect = 6.6
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = -3
Query: 806 NIXXFACIALDSVCVDAPSSRGXECKTDVAGQQXSPILLTG 684
N+ +AC + +S+CVD+ + G C G Q +P L G
Sbjct: 252 NMTSYACHSGNSICVDSKNGPGYLCNCS-EGYQGNPYLPDG 291
>10_02_0062 - 4814139-4814176,4814571-4815627
Length = 364
Score = 28.3 bits (60), Expect = 8.7
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = -3
Query: 794 FACIALDSVCVDAPSSRGXECKTDVAGQQXSPILLTG 684
+AC++ +S C+DA RG +C+ G +P + G
Sbjct: 315 YACVSGNSSCLDAGKGRGYKCECK-EGYNGNPYMPNG 350
>08_01_0400 - 3538570-3540363,3540895-3541639,3543688-3544007
Length = 952
Score = 28.3 bits (60), Expect = 8.7
Identities = 17/81 (20%), Positives = 36/81 (44%), Gaps = 1/81 (1%)
Frame = +3
Query: 87 YAIQRKRMLSYIYLALLVAASHVQSTPAAATAQNVICK-ARNGYYKTDANCDTYIECRDY 263
+ +QR + Y+YLA+++ + + A + + RNG + A+C Y+
Sbjct: 736 FIVQRPTTMFYVYLAIVLGTLLILAVLEVKWAGVTVFEWFRNGQFWMTASCSAYLAAVLQ 795
Query: 264 QATNMICPDGLHFNPSVEWPA 326
T ++ + F + + PA
Sbjct: 796 VVTKVVFRRDISFKLTSKLPA 816
>07_03_1686 + 28657337-28658668
Length = 443
Score = 28.3 bits (60), Expect = 8.7
Identities = 24/87 (27%), Positives = 36/87 (41%), Gaps = 2/87 (2%)
Frame = -3
Query: 542 TAAEVWIEC*SRRAYHVESTTTYACSVLATIGGRSVRMFEDAILVRAIR-CCLGRLDAPS 366
T A V E SR+ Y+ ++C V+ + F DA LV R G+ P+
Sbjct: 200 TPAYVAPEILSRKGYNPAKVDIWSCGVVLFVLAAGYLPFNDASLVNMYRKIYAGKFRCPA 259
Query: 365 SYTCHFNWITARICRPFHA-RIKVQTI 288
++ + RI P A RI + I
Sbjct: 260 WFSPELRCLVRRILDPNPATRIDTEEI 286
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,420,563
Number of Sequences: 37544
Number of extensions: 589880
Number of successful extensions: 1521
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1455
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1520
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2503236492
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -