Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP11_F_I17
         (938 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1739.15 |wtf21|SPCC1739.15, SPCC1739.15|wtf element Wtf21|Sc...    31   0.23 
SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit Bgs3|Schizo...    28   1.7  
SPCC31H12.06 |mug111||sequence orphan|Schizosaccharomyces pombe|...    27   2.9  
SPAC1639.02c |trk2|SPAC1F5.12|potassium ion transporter Trk2|Sch...    27   2.9  
SPCC16C4.02c |||DUF1941 family protein|Schizosaccharomyces pombe...    27   5.0  
SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic...    26   6.7  
SPAC630.06c |||conserved fungal protein|Schizosaccharomyces pomb...    26   6.7  
SPBC354.09c |||Tre1 family protein |Schizosaccharomyces pombe|ch...    26   8.8  
SPCC18.17c |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    26   8.8  

>SPCC1739.15 |wtf21|SPCC1739.15, SPCC1739.15|wtf element
           Wtf21|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 329

 Score = 31.1 bits (67), Expect = 0.23
 Identities = 16/47 (34%), Positives = 25/47 (53%)
 Frame = +1

Query: 166 IVFWILMLIVACISFIYGNPQRLINGFDSFGNTCGVKSNKQLMNNSL 306
           I+ WIL LI+ CI F+Y     LI       +TC + +   L+ +S+
Sbjct: 165 IIIWILWLIICCILFVYIKSGDLILNKALICSTCTISAVLLLIVSSV 211


>SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit
            Bgs3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1826

 Score = 28.3 bits (60), Expect = 1.7
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +1

Query: 139  TDVLWLVIYIVFWILMLIVACISFIYGNPQR 231
            T  +W   Y+ FW+ M  +    FIY NP +
Sbjct: 1434 TMTVWTTHYVYFWVTMFALVICPFIY-NPHQ 1463


>SPCC31H12.06 |mug111||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 468

 Score = 27.5 bits (58), Expect = 2.9
 Identities = 14/43 (32%), Positives = 20/43 (46%)
 Frame = -2

Query: 133 LSWVSHEVLIEVIFHFEYNPFYSQKXWKFVKS*GFPIVXRXEN 5
           +SW  H   I  +FH     F+S K   + +  G PI+   EN
Sbjct: 191 ISWTIH--FINFVFHSLLAVFFSSKYTSYAQKEGQPILNATEN 231


>SPAC1639.02c |trk2|SPAC1F5.12|potassium ion transporter
           Trk2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 880

 Score = 27.5 bits (58), Expect = 2.9
 Identities = 10/21 (47%), Positives = 16/21 (76%)
 Frame = +1

Query: 154 LVIYIVFWILMLIVACISFIY 216
           LV+Y +FW ++ +VA + FIY
Sbjct: 495 LVVYFLFWHILGLVAFLIFIY 515


>SPCC16C4.02c |||DUF1941 family protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 548

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
 Frame = -2

Query: 508 VLQNSVVCLH*QDSCTGLNQFD--GKTV*YHPKILFFCWDTPLHKFL 374
           +L+N    LH QD  +         K +  HP ++F CW+    KFL
Sbjct: 65  LLENCFSLLHAQDDTSKFVSLTMLAKLLNDHPNLIFKCWERMDMKFL 111


>SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic
            subunit Bgs1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1729

 Score = 26.2 bits (55), Expect = 6.7
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +1

Query: 151  WLVIYIVFWILMLIVACISFIYGNPQR 231
            WL  YI FWI +  +    F+Y NP +
Sbjct: 1346 WLPHYIYFWITLTALCISPFLY-NPHQ 1371


>SPAC630.06c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 188

 Score = 26.2 bits (55), Expect = 6.7
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = +1

Query: 352 VKELRKSLKICVKECPNKKIESLDDIKQFYRQTGSNLCNYPV 477
           VK  RK L +  +   NK+I+SLDD+     Q  SN+  + +
Sbjct: 4   VKVTRKDLLLSPE---NKEIDSLDDVSALLSQRLSNVFEFSI 42


>SPBC354.09c |||Tre1 family protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 794

 Score = 25.8 bits (54), Expect = 8.8
 Identities = 28/98 (28%), Positives = 39/98 (39%), Gaps = 5/98 (5%)
 Frame = +1

Query: 409 IESLDDIKQFYRQTGSNLCNYPVNVNTLPNSAELHNYYGPCPTLPVYESFPLLNRCFPKK 588
           + SLD++ Q Y   G     YP   +    S   H YY   P  P + +    NR  PK 
Sbjct: 300 LTSLDNLNQVY-PAGP----YPSANSLYRGSVANHYYYVGDPLTPGWSAHEETNRISPKD 354

Query: 589 AQDIATKV-----FKDFYELLNSWDTIEQMLSDLYSSW 687
           A  + + V     F D  ELL        ++ D  S+W
Sbjct: 355 ANVLPSIVSIPITFNDGIELLKRLQGHGHLVKD--SNW 390


>SPCC18.17c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 488

 Score = 25.8 bits (54), Expect = 8.8
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = +1

Query: 247 DSFGNTCGVKSNKQLMNNSLSGINTLDKKYLFFMDVKELRKS 372
           DS+ +  G+K   +L       IN+LD+K+  F  V+E  K+
Sbjct: 264 DSYTDHIGLKFLPRLCELHPDAINSLDEKHQLFDAVRERMKT 305


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,698,197
Number of Sequences: 5004
Number of extensions: 79829
Number of successful extensions: 239
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 228
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 239
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 477327454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)