Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP11_F_I17
(938 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1619 - 34825922-34825998,34826109-34826200,34827281-348273... 50 4e-06
04_04_1617 - 34815889-34816080,34816185-34816412,34816591-348168... 49 5e-06
01_06_0205 - 27495030-27495128,27495397-27496265,27496352-274965... 35 0.11
06_02_0213 + 13087707-13088423 31 1.0
05_07_0118 + 27811125-27811180,27811724-27811733,27814651-278147... 31 1.7
01_01_0817 + 6364063-6364324,6364422-6364637,6364742-6365272,636... 31 1.7
12_02_0803 + 23318429-23318552,23318688-23319877,23320724-233215... 30 3.1
12_01_0818 + 7524549-7524747,7524855-7525863,7525964-7526108,752... 29 5.3
05_02_0164 - 7240739-7243051,7243902-7244036,7244322-7245371 29 7.1
01_06_0705 + 31342236-31342415,31343086-31343391,31343555-313437... 29 7.1
05_04_0422 + 21122099-21122194,21122353-21122510,21122651-211228... 28 9.3
02_05_0226 + 26971851-26972034,26972734-26972834,26972876-269729... 28 9.3
>04_04_1619 -
34825922-34825998,34826109-34826200,34827281-34827399,
34827507-34827734,34827904-34828164,34828258-34828614,
34828803-34828916,34828990-34829063,34829176-34829359,
34829685-34829830,34829951-34830309,34835569-34835789
Length = 743
Score = 49.6 bits (113), Expect = 4e-06
Identities = 54/244 (22%), Positives = 105/244 (43%), Gaps = 29/244 (11%)
Frame = +1
Query: 136 CTDVLWLVIYIVFWILMLIVACISFIYGNPQRLINGFDSFGNTCGVKSNKQLMNNSLSGI 315
C D+ +LV++ FW+ M++ + F GNP RL D GN CG + + + L
Sbjct: 43 CRDLAFLVLFAAFWVAMIVNSSFGFNQGNPLRLTYELDYKGNICGSRHGDPDL-HELDVR 101
Query: 316 NTLDKKYLFFMDVKE----LRKSLKICVKECPNKKIESLDDIKQF----YRQTGSNLCN- 468
++ ++ VK+ L + IC+ ECP + L+ + + R + + N
Sbjct: 102 YWMNPNQVYQSGVKDNKINLADAKAICLMECPIPAADGLNFVCDYPEGDIRLSIDDWINR 161
Query: 469 -YPVNVNTLPNSAELH-NYYGPC-----PTLPVYESFPLLNRCFPKKAQ----------D 597
Y P+ GPC P++ VY S + R + D
Sbjct: 162 DYDYFEFLAPDMRNSSLQLQGPCYPVIFPSVNVYWSCQFIARASNVSLKHWQQMGGINID 221
Query: 598 IATKVFKDFYELLNSWDTI-EQMLSDLYSSWKEMIIC--IIVAFLCSLLMVSILHLLATS 768
+ K ++ +NS ++ ++ ++D+ SW +I+C ++ FL S++ + ++ +
Sbjct: 222 ENILIDKTIHKAINSKSSVLKRYVADIGKSWPVLIVCGGLLPLFL-SVIWLLLIRYFVAA 280
Query: 769 VSWI 780
+ WI
Sbjct: 281 MPWI 284
>04_04_1617 -
34815889-34816080,34816185-34816412,34816591-34816851,
34816943-34817299,34817466-34817579,34817653-34817726,
34817839-34818022,34818349-34818494,34818628-34818986,
34819912-34820132
Length = 711
Score = 49.2 bits (112), Expect = 5e-06
Identities = 28/100 (28%), Positives = 48/100 (48%), Gaps = 4/100 (4%)
Frame = +1
Query: 136 CTDVLWLVIYIVFWILMLIVACISFIYGNPQRLINGFDSFGNTCGVKSNKQLMNNSLSGI 315
C D+ +LV++ FW+ M++ + F GNP RL D GN CG + + + L
Sbjct: 43 CRDLAFLVLFAAFWVAMIVNSSFGFNQGNPLRLTYELDYKGNICGSRHGDPDL-HELDVR 101
Query: 316 NTLDKKYLFFMDVKE----LRKSLKICVKECPNKKIESLD 423
++ ++ VK+ L + IC+ ECP + L+
Sbjct: 102 YWMNPNQVYQSGVKDNKINLADAKAICLMECPMPAADGLN 141
>01_06_0205 -
27495030-27495128,27495397-27496265,27496352-27496511,
27497136-27497208,27497311-27497430,27498454-27498618,
27498695-27498785,27499381-27499465,27499555-27499740,
27499843-27499899,27499998-27500282
Length = 729
Score = 34.7 bits (76), Expect = 0.11
Identities = 18/38 (47%), Positives = 23/38 (60%), Gaps = 5/38 (13%)
Frame = -2
Query: 136 SLSWVSHEVLIEVIFHFEYNPFYSQK-----XWKFVKS 38
SLS V+H V ++ IFH YNP SQ WKF++S
Sbjct: 269 SLSEVAHAVAVKSIFHIYYNPRLSQSEFIIPYWKFMRS 306
>06_02_0213 + 13087707-13088423
Length = 238
Score = 31.5 bits (68), Expect = 1.0
Identities = 17/68 (25%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
Frame = +1
Query: 313 INTLDKKYLFFMDVKELRKSLKICVKECPNKK-IESLDDIKQFYRQTGSNLCNYPVNVNT 489
IN L + Y F ++ ++ CV PN++ + S +D+K S+ + ++++
Sbjct: 165 INQLFQNYAMFSNMMRVQH----CVTALPNQQFLPSSEDVKPMIHHVPSSSYGWNTSIDS 220
Query: 490 LPNSAELH 513
PNS++ H
Sbjct: 221 KPNSSDAH 228
>05_07_0118 +
27811125-27811180,27811724-27811733,27814651-27814707,
27814816-27814986,27815101-27815185,27815811-27815901,
27815975-27816139,27816563-27816682,27816774-27816846,
27817725-27817884,27817968-27818833,27819143-27819229
Length = 646
Score = 30.7 bits (66), Expect = 1.7
Identities = 20/48 (41%), Positives = 26/48 (54%), Gaps = 9/48 (18%)
Frame = -2
Query: 154 ATEHQCS----LSWVSHEVLIEVIFHFEYNPFYSQK-----XWKFVKS 38
A +QCS L+ V+H V E +F+ YNP SQ WKF+KS
Sbjct: 181 ALYNQCSNLGTLANVAHAVATESVFNIYYNPRLSQSEFIVPYWKFMKS 228
>01_01_0817 +
6364063-6364324,6364422-6364637,6364742-6365272,
6365617-6365681
Length = 357
Score = 30.7 bits (66), Expect = 1.7
Identities = 13/34 (38%), Positives = 22/34 (64%), Gaps = 2/34 (5%)
Frame = +1
Query: 169 VFWILMLIVACISFIYGNPQR--LINGFDSFGNT 264
V ++L+L++AC+ + NP R L+ SFGN+
Sbjct: 7 VAFVLLLLLACLHYAQANPSRRPLVQSIFSFGNS 40
>12_02_0803 + 23318429-23318552,23318688-23319877,23320724-23321528,
23321938-23322417,23322535-23322815,23323207-23323302,
23323423-23323548,23324100-23325890
Length = 1630
Score = 29.9 bits (64), Expect = 3.1
Identities = 18/44 (40%), Positives = 24/44 (54%)
Frame = +1
Query: 469 YPVNVNTLPNSAELHNYYGPCPTLPVYESFPLLNRCFPKKAQDI 600
YP+ + L SA LH YG CP L ++ LL +PK+ Q I
Sbjct: 1250 YPMCPHILVFSARLHRKYGSCPGLKGFDEL-LLG--WPKEVQGI 1290
>12_01_0818 +
7524549-7524747,7524855-7525863,7525964-7526108,
7526206-7526295,7526404-7526553,7527333-7528094,
7528177-7528496,7528581-7528707,7528792-7528959,
7529054-7530466,7530563-7530823,7530983-7531144,
7531976-7532121,7532601-7532667,7533483-7533587
Length = 1707
Score = 29.1 bits (62), Expect = 5.3
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +1
Query: 52 SXVFGNKMGCTQSEISPQSTPHETP 126
S + ++GC EISP +TP+ TP
Sbjct: 24 SSIIDGEIGCPSMEISPCNTPYGTP 48
>05_02_0164 - 7240739-7243051,7243902-7244036,7244322-7245371
Length = 1165
Score = 28.7 bits (61), Expect = 7.1
Identities = 18/60 (30%), Positives = 25/60 (41%), Gaps = 1/60 (1%)
Frame = +1
Query: 403 KKIESLDDIKQFYRQTGSNLCNYPVNVNTLPNSAELHNYY-GPCPTLPVYESFPLLNRCF 579
+ + L I+ F L P + + N+ L N Y CP L V E PLLN +
Sbjct: 961 ESVRQLVSIENFPSLVNLQLIENP-KLERVTNNPSLKNIYIWECPALKVLEELPLLNSIY 1019
>01_06_0705 +
31342236-31342415,31343086-31343391,31343555-31343796,
31343927-31344122,31344419-31344602,31344984-31345147,
31345454-31345981,31346530-31346630,31347619-31347634,
31347834-31347941,31348028-31348078,31349059-31349100,
31349442-31349541,31350039-31350256,31350367-31350807,
31350916-31351043,31351131-31351992
Length = 1288
Score = 28.7 bits (61), Expect = 7.1
Identities = 18/55 (32%), Positives = 22/55 (40%), Gaps = 4/55 (7%)
Frame = +1
Query: 523 GPCPTLPVYESFPLLNRCFPKKAQDIATKV----FKDFYELLNSWDTIEQMLSDL 675
GP PV SFP + CF +KA + T V F + SW E L
Sbjct: 149 GPPTDEPVVCSFPKMAECFNRKAGLLETTVPLGSFNSLFSFTGSWKNDEAATKSL 203
>05_04_0422 +
21122099-21122194,21122353-21122510,21122651-21122866,
21122965-21123379
Length = 294
Score = 28.3 bits (60), Expect = 9.3
Identities = 14/52 (26%), Positives = 22/52 (42%)
Frame = +1
Query: 76 GCTQSEISPQSTPHETPKKGCTDVLWLVIYIVFWILMLIVACISFIYGNPQR 231
GC +S S T C + W+ I F ++ L IS ++G+ R
Sbjct: 60 GCRESRAVVPSATKRTVAVACAAISWIATVIAF-VMFLDTGGISVVHGSSSR 110
>02_05_0226 +
26971851-26972034,26972734-26972834,26972876-26972978,
26973335-26973477,26973525-26973605,26973929-26974015,
26974097-26974239,26974746-26974896,26974973-26975095,
26975362-26975445,26975531-26975718,26976726-26976900,
26977008-26977129,26977231-26977310,26977532-26977590,
26977921-26978075,26978680-26978858,26980050-26980162,
26980243-26980413,26980552-26980680,26980756-26980856,
26980942-26981059,26981739-26981818,26983230-26983302,
26983865-26983950,26984025-26984076,26984221-26984352,
26984560-26984628,26984912-26985004,26985806-26985901,
26986710-26986808,26986894-26986986,26987459-26987608,
26988391-26988549
Length = 1323
Score = 28.3 bits (60), Expect = 9.3
Identities = 11/34 (32%), Positives = 21/34 (61%)
Frame = +1
Query: 409 IESLDDIKQFYRQTGSNLCNYPVNVNTLPNSAEL 510
+ +L+ +K YR SNLC+ P + + LP+ ++
Sbjct: 852 VATLNKVKTPYRPVESNLCSLPPSRDRLPSGKQI 885
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,789,713
Number of Sequences: 37544
Number of extensions: 434038
Number of successful extensions: 1029
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 989
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1029
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2694390200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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