Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP11_F_I17
         (938 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40941-4|AAA81709.1|  771|Caenorhabditis elegans Hypothetical pr...    64   2e-13
U40941-3|AAM51502.1|  730|Caenorhabditis elegans Hypothetical pr...    62   1e-12
AF300704-1|AAG24400.1|  622|Caenorhabditis elegans incenp-like p...    29   6.3  
AC025716-5|AAK39616.1|  622|Caenorhabditis elegans Incenp homolo...    29   6.3  

>U40941-4|AAA81709.1|  771|Caenorhabditis elegans Hypothetical
           protein F35C8.7a protein.
          Length = 771

 Score = 64.5 bits (150), Expect(2) = 2e-13
 Identities = 56/209 (26%), Positives = 91/209 (43%), Gaps = 16/209 (7%)
 Frame = +1

Query: 94  ISPQSTPHETPKKGCTDVLWLVIYIVFWILMLIVACISFIYGNPQRLINGFDSFGNTCGV 273
           ++ +  P    K+GCTDV    ++ VF    ++VA    ++G+PQRLI   DS    CGV
Sbjct: 75  LAKRHNPQLYTKRGCTDVFCCFLFFVFLCGWVVVAGFGIMWGDPQRLIYPTDSEFRRCGV 134

Query: 274 KSNKQLMNNSLSGINTLDKKYLFFMDVKEL---------RKSLKICVKECPNKKIESLD- 423
                   N     N   + YLF+ D+ +           ++ ++CVKECP+     L  
Sbjct: 135 --------NLEGSYNFSKRPYLFYFDLTKCISYATALGGCQTTQLCVKECPSTYFSYLQL 186

Query: 424 ---DIKQFYRQTGSNL-CNYPVNVNTLPNSAELHNYY--GPCPTLPVYESFPLLNRCFPK 585
               + +   +  S + C   V+  T+     L N    G C +  V +S P+L RCFP+
Sbjct: 187 RTASVSEIQNKMKSVVYCTDDVDKTTVTTFQALQNLVQRGKCVSYTV-KSVPVLQRCFPE 245

Query: 586 KAQDIATKVFKDFYELLNSWDTIEQMLSD 672
              +    V  +     NS D +++   D
Sbjct: 246 AIFNAVDNV-NNVLNSSNSLDYLKRTFGD 273



 Score = 29.1 bits (62), Expect(2) = 2e-13
 Identities = 11/41 (26%), Positives = 23/41 (56%)
 Frame = +1

Query: 658 QMLSDLYSSWKEMIICIIVAFLCSLLMVSILHLLATSVSWI 780
           +++ DL  +W + +I I  A + S +   I+ LL + + W+
Sbjct: 303 KVIHDLSQTWWQTLILIFAAGILSFIWTVIMRLLGSLIIWL 343


>U40941-3|AAM51502.1|  730|Caenorhabditis elegans Hypothetical
           protein F35C8.7b protein.
          Length = 730

 Score = 62.1 bits (144), Expect(2) = 1e-12
 Identities = 54/198 (27%), Positives = 87/198 (43%), Gaps = 16/198 (8%)
 Frame = +1

Query: 127 KKGCTDVLWLVIYIVFWILMLIVACISFIYGNPQRLINGFDSFGNTCGVKSNKQLMNNSL 306
           ++GCTDV    ++ VF    ++VA    ++G+PQRLI   DS    CGV        N  
Sbjct: 45  RRGCTDVFCCFLFFVFLCGWVVVAGFGIMWGDPQRLIYPTDSEFRRCGV--------NLE 96

Query: 307 SGINTLDKKYLFFMDVKEL---------RKSLKICVKECPNKKIESLD----DIKQFYRQ 447
              N   + YLF+ D+ +           ++ ++CVKECP+     L      + +   +
Sbjct: 97  GSYNFSKRPYLFYFDLTKCISYATALGGCQTTQLCVKECPSTYFSYLQLRTASVSEIQNK 156

Query: 448 TGSNL-CNYPVNVNTLPNSAELHNYY--GPCPTLPVYESFPLLNRCFPKKAQDIATKVFK 618
             S + C   V+  T+     L N    G C +  V +S P+L RCFP+   +    V  
Sbjct: 157 MKSVVYCTDDVDKTTVTTFQALQNLVQRGKCVSYTV-KSVPVLQRCFPEAIFNAVDNV-N 214

Query: 619 DFYELLNSWDTIEQMLSD 672
           +     NS D +++   D
Sbjct: 215 NVLNSSNSLDYLKRTFGD 232



 Score = 29.1 bits (62), Expect(2) = 1e-12
 Identities = 11/41 (26%), Positives = 23/41 (56%)
 Frame = +1

Query: 658 QMLSDLYSSWKEMIICIIVAFLCSLLMVSILHLLATSVSWI 780
           +++ DL  +W + +I I  A + S +   I+ LL + + W+
Sbjct: 262 KVIHDLSQTWWQTLILIFAAGILSFIWTVIMRLLGSLIIWL 302


>AF300704-1|AAG24400.1|  622|Caenorhabditis elegans incenp-like
           protein ICP-1 protein.
          Length = 622

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 13/40 (32%), Positives = 24/40 (60%), Gaps = 3/40 (7%)
 Frame = +1

Query: 532 PTLPVYESFPLLNRCFPKKAQ---DIATKVFKDFYELLNS 642
           PT+ ++ S P ++  F + ++   D A KVF D Y+ ++S
Sbjct: 15  PTIKLFSSIPKISSIFDEVSEAHDDAAAKVFADLYKRMSS 54


>AC025716-5|AAK39616.1|  622|Caenorhabditis elegans Incenp homolog
           protein 1 protein.
          Length = 622

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 13/40 (32%), Positives = 24/40 (60%), Gaps = 3/40 (7%)
 Frame = +1

Query: 532 PTLPVYESFPLLNRCFPKKAQ---DIATKVFKDFYELLNS 642
           PT+ ++ S P ++  F + ++   D A KVF D Y+ ++S
Sbjct: 15  PTIKLFSSIPKISSIFDEVSEAHDDAAAKVFADLYKRMSS 54


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,928,527
Number of Sequences: 27780
Number of extensions: 429256
Number of successful extensions: 1261
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1189
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1257
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2423194158
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)