Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP11_F_I14
(894 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC365.06 |pmt3|ubl2, smt3|SUMO|Schizosaccharomyces pombe|chr 2... 91 1e-19
SPBC1921.02 |rad60||DNA repair protein Rad60 |Schizosaccharomyce... 32 0.096
SPBC18H10.09 |||zinc finger protein, zf-CHY type|Schizosaccharom... 29 1.2
SPAC6F12.09 |rdp1|rdr1|RNA-directed RNA polymerase Rdp1|Schizosa... 28 2.1
SPCC663.14c |||TRP-like ion channel|Schizosaccharomyces pombe|ch... 27 2.7
SPBC13G1.15c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual 27 4.8
SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces pom... 27 4.8
SPAC1420.04c |cox1101|cox11, SPAPB17E12.01c, cox11|fusion cytoch... 26 6.3
SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr... 26 6.3
SPAC19B12.13 |cox1102|cox11, cox11-b, cox11, SPAPB8E5.01|fusion ... 26 6.3
SPAC2G11.13 |atg22||autophagy associated protein Atg22 |Schizosa... 26 6.3
SPAC1F3.03 |||Lgl family protein|Schizosaccharomyces pombe|chr 1... 26 6.3
SPAC9E9.08 |rad26||ATRIP|Schizosaccharomyces pombe|chr 1|||Manual 26 8.3
SPAPB1E7.01c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 26 8.3
>SPBC365.06 |pmt3|ubl2, smt3|SUMO|Schizosaccharomyces pombe|chr
2|||Manual
Length = 117
Score = 91.5 bits (217), Expect = 1e-19
Identities = 45/82 (54%), Positives = 52/82 (63%)
Frame = +3
Query: 177 KGENEHINLKVLGQDNAIVQFKIKKHTPLRKLMNAYCDRAGLSMQVVRFRFDGQPINEND 356
K EHINLKV+GQDN V FKIKK T KLM YC R G SM +RF DG+ I +
Sbjct: 30 KPSTEHINLKVVGQDNNEVFFKIKKTTEFSKLMKIYCARQGKSMNSLRFLVDGERIRPDQ 89
Query: 357 TPTSLEMEEGDTIEVYQQQTGG 422
TP L+ME+GD IE +Q GG
Sbjct: 90 TPAELDMEDGDQIEAVLEQLGG 111
>SPBC1921.02 |rad60||DNA repair protein Rad60 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 406
Score = 32.3 bits (70), Expect = 0.096
Identities = 14/48 (29%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Frame = +3
Query: 261 LRKLMNAYCDRAGLSM-QVVRFRFDGQPINENDTPTSLEMEEGDTIEV 401
++ L+ YC +S + +R F+G+ ++ ND S E+E+ D + V
Sbjct: 356 VKDLIKRYCTEVKISFHERIRLEFEGEWLDPNDQVQSTELEDEDQVSV 403
>SPBC18H10.09 |||zinc finger protein, zf-CHY
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 428
Score = 28.7 bits (61), Expect = 1.2
Identities = 27/92 (29%), Positives = 40/92 (43%), Gaps = 3/92 (3%)
Frame = -3
Query: 721 QSCLRRRVN*TYHNGIVEVTYSIWYTYNLPYHKLFETHNALRSSAMLLCVTKLLPNTFTD 542
Q+ + + V + N + T + + Y L K FET N M+ V P T TD
Sbjct: 2 QTAMNKYVETAFQNQ--KTTLTSLFNYLLQNWKSFETCNTKERELMVQQVDSKKPETPTD 59
Query: 541 TNDVSLKLT*G*SLRRVHL---IDFDPLEMVN 455
++ KL G RVHL +D++ L N
Sbjct: 60 LEPLANKLE-GPLSERVHLNTTLDYEVLRGQN 90
>SPAC6F12.09 |rdp1|rdr1|RNA-directed RNA polymerase
Rdp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1215
Score = 27.9 bits (59), Expect = 2.1
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = +1
Query: 61 KLSFTRSFVKTDTKSVCQVHSFVLIVSRTTL 153
+L FT+SFV D S +H L V+ TTL
Sbjct: 434 ELDFTKSFVFYDLSSASSIHIKKLYVTPTTL 464
>SPCC663.14c |||TRP-like ion channel|Schizosaccharomyces pombe|chr
3|||Manual
Length = 687
Score = 27.5 bits (58), Expect = 2.7
Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Frame = -1
Query: 675 LLKLPTAFGILIIY-LTTSYLRRIMLCVARLCYYVSQNYFLTLLQIQMMFL 526
L+ L A GI+II+ L +LR+ + C Y+++ +F L M ++
Sbjct: 334 LISLAIAGGIVIIFVLIIKFLRQTRIIAKSSCDYITRYWFRVLFNACMRWV 384
>SPBC13G1.15c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual
Length = 111
Score = 26.6 bits (56), Expect = 4.8
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = -1
Query: 645 LIIYLTTSYLRRIMLCVARLCYYVSQNYFL 556
L+I + T Y RRI+ C A LC + Y+L
Sbjct: 39 LLIVVITLY-RRIVECCASLCSLIFSKYYL 67
>SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1562
Score = 26.6 bits (56), Expect = 4.8
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = -1
Query: 483 LILTHWRWSILKIIKFTLGTLLR 415
L+ H RWS +++ K+ LGT +
Sbjct: 1285 LLFCHGRWSYVRLSKYILGTFYK 1307
>SPAC1420.04c |cox1101|cox11, SPAPB17E12.01c, cox11|fusion
cytochrome c oxidase assembly protein Cox1101,
mitochondrial ribosomal protein
Rsm22|Schizosaccharomyces pombe|chr 1|||Manual
Length = 753
Score = 26.2 bits (55), Expect = 6.3
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = -2
Query: 275 HQFPERCVFLYFELYNCI 222
H+FP C+F F YNCI
Sbjct: 533 HRFP--CIFTSFSCYNCI 548
>SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1516
Score = 26.2 bits (55), Expect = 6.3
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = -2
Query: 242 FELYNCIILT*YFQINVFVFSLLFI 168
+E+YN +I + Y INV F+ LFI
Sbjct: 1307 YEIYNALIRSIYRFINVEAFNSLFI 1331
>SPAC19B12.13 |cox1102|cox11, cox11-b, cox11, SPAPB8E5.01|fusion
cytochrome c oxidase assembly protein Cox1102,
mitochondrial ribosomal protein
Rsm2202|Schizosaccharomyces pombe|chr 1|||Manual
Length = 753
Score = 26.2 bits (55), Expect = 6.3
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = -2
Query: 275 HQFPERCVFLYFELYNCI 222
H+FP C+F F YNCI
Sbjct: 533 HRFP--CIFTSFSCYNCI 548
>SPAC2G11.13 |atg22||autophagy associated protein Atg22
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 529
Score = 26.2 bits (55), Expect = 6.3
Identities = 12/40 (30%), Positives = 20/40 (50%)
Frame = +1
Query: 79 SFVKTDTKSVCQVHSFVLIVSRTTLISKWLMKRREKTNTL 198
+ + T + V+ FV++V L S W+M + KT L
Sbjct: 485 TLISNYTSDLRAVYIFVIVVMTLPLSSLWIMYQHSKTPNL 524
>SPAC1F3.03 |||Lgl family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1004
Score = 26.2 bits (55), Expect = 6.3
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = -1
Query: 741 LLLQHYNSLAFVDVSTKHITMELLKLPTAFGIL 643
LLL NSL+ +D+ST +I+ L +P + L
Sbjct: 401 LLLSEDNSLSLLDISTGNISNMSLSIPPSLCFL 433
>SPAC9E9.08 |rad26||ATRIP|Schizosaccharomyces pombe|chr 1|||Manual
Length = 614
Score = 25.8 bits (54), Expect = 8.3
Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 5/68 (7%)
Frame = +1
Query: 46 NWPSHKLSFTRSFVKTDTKSVCQV-----HSFVLIVSRTTLISKWLMKRREKTNTLI*KY 210
N+ KL + SF T + + +F+ + +LIS +L+K EK+N L K+
Sbjct: 311 NYSMKKLLYNASFAITSLFNALLILDPKSSTFIFQENVVSLISGFLLKEYEKSNFLDSKF 370
Query: 211 *VKIMQLY 234
V I LY
Sbjct: 371 YVLIDFLY 378
>SPAPB1E7.01c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 163
Score = 25.8 bits (54), Expect = 8.3
Identities = 12/40 (30%), Positives = 25/40 (62%)
Frame = +3
Query: 69 IYAFVCENRYQISLSSSQFCINSF*NHINLKMADEKKGEN 188
+ A V N+YQ S+S ++ INS+ + N ++ ++K ++
Sbjct: 5 VSADVLLNKYQTSISITKNLINSWLGNENTSVSSDEKNDD 44
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,249,909
Number of Sequences: 5004
Number of extensions: 63795
Number of successful extensions: 137
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 450492750
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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