Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP11_F_I13
(896 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC29A4.02c |||translation elongation factor EF-1 gamma subunit... 77 3e-15
SPCC1183.02 |||glutathione S-transferase |Schizosaccharomyces po... 61 2e-10
SPAC30C2.04 |||cofactor for methionyl-and glutamyl-tRNA syntheta... 31 0.22
SPAC16.05c |sfp1||transcription factor Sfp1 |Schizosaccharomyces... 28 1.6
SPAC14C4.04 |B22918-2||hypothetical protein|Schizosaccharomyces ... 27 3.6
SPBC28F2.09 |||transcription factor TFIIA complex large subunit ... 26 6.3
SPBC16A3.11 |eso1||sister chromatid cohesion protein Eso1|Schizo... 26 6.3
SPAC15F9.02 |seh1||nucleoporin Seh1 |Schizosaccharomyces pombe|c... 26 8.4
>SPAC29A4.02c |||translation elongation factor EF-1 gamma subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 409
Score = 77.4 bits (182), Expect = 3e-15
Identities = 54/190 (28%), Positives = 93/190 (48%), Gaps = 4/190 (2%)
Frame = +2
Query: 191 NKSEDFLKKFPAGKVPAFESADGKVLLTESNAIAYYVAN----ESLRGGDLATQARVWQW 358
N D KFP K+P F DG L+E+ AIA+Y+A+ +L G +A+V Q+
Sbjct: 38 NFPADLAAKFPLQKMPVFVGKDG-FPLSETLAIAFYLASLNKTRALNGTTAEEKAKVLQY 96
Query: 359 ASWSDSELLPASCAWVFPYLGIMQFNKQNVERAKSDLLAALKVLDGHLLTRTFLVTERIT 538
S+++SEL A + P + +++Q + A++ + D L ++T+LV R+T
Sbjct: 97 CSFTNSELPGAFRPIIAPRVFGAPYDEQAAKEAETAIALIFARFDEELASKTYLVGSRLT 156
Query: 539 LADVIVFSTLLHAFQHVLDPSVRSSLINVQRWXLTVAHQPQVSAVVGSLTLCAAPPTYXP 718
LAD+ L +VL S + ++ R+ T+ HQ ++ A+ L P
Sbjct: 157 LADIFFTCFLKFGATYVLTKSYLAKYTHIYRYYQTIYHQAKLDAITEPLKFIDQPLPIIK 216
Query: 719 KKYQELAGAQ 748
+ +E A A+
Sbjct: 217 AENKEAAPAK 226
>SPCC1183.02 |||glutathione S-transferase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 220
Score = 60.9 bits (141), Expect = 2e-10
Identities = 42/164 (25%), Positives = 80/164 (48%), Gaps = 8/164 (4%)
Frame = +2
Query: 197 SEDFLKKFPAGKVPAFESADGKVLLTESNAIAYYVAN------ESLRGGDLATQARVWQW 358
S D KFP K+P F ADG L + Y+ E L + +A + +W
Sbjct: 40 SADLAAKFPLQKLPVFIGADGFELSEVIAIVKYFYEKGKHNDKEGLGPVNEVEEAEMLKW 99
Query: 359 ASWSDSELL-PASCA-WVFPYLGIMQFNKQNVERAKSDLLAALKVLDGHLLTRTFLVTER 532
+ + +++ P + WV + G + + ++ + + + + +LK+ + + RT+LV +R
Sbjct: 100 MCFINFDIVTPQNVRPWVGMFRGNIPYEEKPFKESATRAIDSLKIPNELVKDRTYLVGDR 159
Query: 533 ITLADVIVFSTLLHAFQHVLDPSVRSSLINVQRWXLTVAHQPQV 664
TLAD+ S L F ++D R L ++ R+ +T+ HQ ++
Sbjct: 160 FTLADLFFGSLLRIFFNSIIDEKTRKELPHLTRYYITMFHQAKL 203
>SPAC30C2.04 |||cofactor for methionyl-and glutamyl-tRNA synthetases
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 450
Score = 31.1 bits (67), Expect = 0.22
Identities = 20/69 (28%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Frame = +2
Query: 488 LDGHLLTRTFLVTER-ITLADVIVFSTLLHAFQHVLDPSVRSSLINVQRWXLTVAHQPQV 664
LD L + TF+ + I++AD+ V++ + H++ L L NV RW + HQ V
Sbjct: 128 LDEFLKSSTFIAQDSGISVADLAVYARI-HSYICGLSAKEGYKLNNVCRWFDFIQHQESV 186
Query: 665 SAVVGSLTL 691
S+++
Sbjct: 187 MEAANSMSM 195
>SPAC16.05c |sfp1||transcription factor Sfp1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 442
Score = 28.3 bits (60), Expect = 1.6
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +3
Query: 465 TYWPP*KYWTDIFSHAPSLLPRESHLPMSLS 557
TY PP Y D+FS APS+ + S+S
Sbjct: 257 TYLPPFNYDHDVFSFAPSVASADQFTESSMS 287
>SPAC14C4.04 |B22918-2||hypothetical protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 267
Score = 27.1 bits (57), Expect = 3.6
Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Frame = +3
Query: 327 IWLPKPVSGSGHHGLTANYCL-LPALGSSLTLV 422
+W+P PV SG T C+ LP G +T V
Sbjct: 23 LWVPTPVGRSGRKHRTLKMCIVLPDTGYDVTQV 55
>SPBC28F2.09 |||transcription factor TFIIA complex large subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 369
Score = 26.2 bits (55), Expect = 6.3
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = -3
Query: 267 STFPSALSNAGTFPAGNFFKKSSDL 193
+TFP A + GTFP G F S L
Sbjct: 52 ATFPWAQAPVGTFPIGQLFDPVSGL 76
>SPBC16A3.11 |eso1||sister chromatid cohesion protein
Eso1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 872
Score = 26.2 bits (55), Expect = 6.3
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +2
Query: 278 SNAIAYYVANESLRGGDLATQARVWQWAS 364
S + A Y+ NE+LR G + +R+W AS
Sbjct: 780 STSSAVYIKNENLRKGFVLGISRIWVSAS 808
>SPAC15F9.02 |seh1||nucleoporin Seh1 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 339
Score = 25.8 bits (54), Expect = 8.4
Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Frame = +3
Query: 357 GHHGLTANYCLLPALGSSLTLV--SCNSTN-RMLNVQSL 464
GH L + C P++GSS L+ +C N R+ V++L
Sbjct: 213 GHTDLIRDICWAPSMGSSYYLIATACKDGNVRIFKVETL 251
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,466,204
Number of Sequences: 5004
Number of extensions: 71747
Number of successful extensions: 231
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 223
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 229
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 452494940
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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