Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP11_F_I11
         (942 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC27D7.11c |||But2 family protein|Schizosaccharomyces pombe|ch...    29   0.72 
SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyc...    27   3.8  
SPBC19C2.07 |fba1||fructose-bisphosphate aldolase Fba1|Schizosac...    27   3.8  
SPCC4B3.18 |||phosphopantothenate-cysteine ligase|Schizosaccharo...    26   6.7  
SPBC15D4.14 |taf73||TATA-binding protein associated factor |Schi...    26   8.8  
SPBC1105.14 |rsv2||transcription factor Rsv2|Schizosaccharomyces...    26   8.8  
SPBC13A2.02 |||nucleoporin Nup82|Schizosaccharomyces pombe|chr 2...    26   8.8  
SPAC22G7.02 |kap111||karyopherin Kap111|Schizosaccharomyces pomb...    26   8.8  
SPAC1952.17c ||SPAC890.01c|GTPase activating protein|Schizosacch...    26   8.8  

>SPAC27D7.11c |||But2 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 463

 Score = 29.5 bits (63), Expect = 0.72
 Identities = 16/38 (42%), Positives = 22/38 (57%)
 Frame = -1

Query: 861 SSYNDTTCXSTYNTKSRPVPSFTRFIISTCAQSPATTL 748
           S+YN TT  S +N+ S P P+ T    ST   + ATT+
Sbjct: 174 STYNSTTS-SYHNSTSTPPPTITSTKASTVTSTEATTV 210


>SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1679

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = +2

Query: 359 KLKAATSDD-LNMLISLLESPILRSITTLHDSVGMLATQVAHH 484
           KL  A S+D    L+S+   PIL  + + H+SV      +A+H
Sbjct: 15  KLALAESEDSFQSLVSVFLCPILLKLDSPHESVRNKTISIANH 57


>SPBC19C2.07 |fba1||fructose-bisphosphate aldolase
           Fba1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 358

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = -3

Query: 124 GNPSASQKNNKLIFSPRLAIH 62
           GNP  + K NK  F PR+ IH
Sbjct: 315 GNPEGADKPNKKKFDPRVWIH 335


>SPCC4B3.18 |||phosphopantothenate-cysteine
           ligase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 316

 Score = 26.2 bits (55), Expect = 6.7
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = -1

Query: 819 KSRPVPSFTRFIISTCAQSPATTL*LVDAKESSLRDKS 706
           K  PVP F RF++ T A   +     ++   S L DK+
Sbjct: 208 KMHPVPKFLRFLVDTWAPEASIISFKLETDPSILIDKA 245


>SPBC15D4.14 |taf73||TATA-binding protein associated factor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 642

 Score = 25.8 bits (54), Expect = 8.8
 Identities = 13/48 (27%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
 Frame = +2

Query: 278 MHLGVNVSNALQQLESV--KAAVDQSNDPKLKAATSDDLNMLISLLES 415
           +H   N+   L + E++  ++ ++  +DP L      D++  +SLLES
Sbjct: 277 LHPAKNLVELLTEKENLINESTLESPSDPPLPPTKMKDIDYFVSLLES 324


>SPBC1105.14 |rsv2||transcription factor Rsv2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 637

 Score = 25.8 bits (54), Expect = 8.8
 Identities = 11/38 (28%), Positives = 21/38 (55%)
 Frame = +2

Query: 578 EQRVPQVSPPHSMEFGSDNEHILGLDSGSVDSNMSPKQ 691
           +QR+P +SPP +  + + +   L L +     ++SP Q
Sbjct: 413 KQRIPSLSPPITRSYNAKHRPSLVLGTSVNPHSLSPSQ 450


>SPBC13A2.02 |||nucleoporin Nup82|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 803

 Score = 25.8 bits (54), Expect = 8.8
 Identities = 14/64 (21%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
 Frame = +2

Query: 539 QTRNLYGNQEGEEEQRVPQVSPPHSM-EFGSDNEHILGLDSGSVDSNMSPKQSRGLLDLS 715
           Q  +LY +         P +  P+S+  + ++  H++ ++S + D N++ + S  L +  
Sbjct: 416 QVHSLYLSNNNPYMVLQPDIQSPYSLIAYHANGLHVVDIESWARDLNLNFENSEFLNNEE 475

Query: 716 RNDD 727
            ND+
Sbjct: 476 ENDE 479


>SPAC22G7.02 |kap111||karyopherin Kap111|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 990

 Score = 25.8 bits (54), Expect = 8.8
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = -1

Query: 726 SSLRDKSNKPRLCLGDMLESTEPLSSPRICSL 631
           SS RD  N  R  LGD+LES+  +   R+ ++
Sbjct: 432 SSSRDSFNSYRRDLGDLLESSYSIFGERLYAM 463


>SPAC1952.17c ||SPAC890.01c|GTPase activating
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 619

 Score = 25.8 bits (54), Expect = 8.8
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = -1

Query: 681 DMLESTEPLSSPRICSL 631
           D+L S EP+S P +CSL
Sbjct: 12  DILNSEEPISLPGLCSL 28


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,687,631
Number of Sequences: 5004
Number of extensions: 77817
Number of successful extensions: 212
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 204
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 212
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 479324640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)