Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP11_F_I11
         (942 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0594 - 9695616-9696042,9696646-9697260,9697410-9697717,970...    32   0.58 
11_06_0173 + 20891526-20891957                                         30   2.3  
03_04_0151 - 17729023-17729372,17729441-17730623,17730723-177309...    30   3.1  
09_02_0564 + 10698710-10699294                                         29   5.4  
03_02_0569 - 9528027-9529256,9530019-9530260,9530374-9531161,953...    29   7.1  
02_02_0346 - 9214365-9214583,9214830-9214919,9215012-9215177,921...    29   7.1  

>03_02_0594 - 9695616-9696042,9696646-9697260,9697410-9697717,
            9700145-9700235,9700698-9700759,9701256-9702962,
            9703789-9703870,9703972-9704057,9704855-9704968,
            9705113-9705163,9705261-9705358,9707084-9707546
          Length = 1367

 Score = 32.3 bits (70), Expect = 0.58
 Identities = 29/131 (22%), Positives = 50/131 (38%), Gaps = 4/131 (3%)
 Frame = +2

Query: 347  SNDPKLKAATSDDLNMLISLLESPILRSITTLHDSVGMLATQVAHHPSILPGDFDITPAG 526
            S++ K++      L   I  LES  +  +     S+G L++           + D+   G
Sbjct: 1108 SDEVKIRNKAERRLRRAIKKLESLKILDVELSDSSIGSLSSNSCSGHRAPETEADVNNPG 1167

Query: 527  DLALQTRNLYGNQEGE----EEQRVPQVSPPHSMEFGSDNEHILGLDSGSVDSNMSPKQS 694
              A     +  +QEG       ++ P V      E G D E      SG    +   +++
Sbjct: 1168 SSAGSCTQVNSSQEGSWCSVVSEQSPSVHCKEEEENGLDPEDAKNCGSGEEAGDHDSERT 1227

Query: 695  RGLLDLSRNDD 727
             G L  SR+D+
Sbjct: 1228 HGTLPCSRDDE 1238


>11_06_0173 + 20891526-20891957
          Length = 143

 Score = 30.3 bits (65), Expect = 2.3
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = -2

Query: 350 CSGPQQLSHFPIAVMHLRRSRPNAS*KINFQKTKSN 243
           CS P  L+H    V HLR  +PN   ++  ++T +N
Sbjct: 89  CSRPYPLAHLDRHVQHLRGGQPNLGLRVKRRETLTN 124


>03_04_0151 -
           17729023-17729372,17729441-17730623,17730723-17730953,
           17730975-17731036,17732085-17732157,17737044-17737834,
           17737932-17738004
          Length = 920

 Score = 29.9 bits (64), Expect = 3.1
 Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
 Frame = +2

Query: 407 LESP-ILRSITTLHDSVGMLATQVAHHP-SILPGDFDITPAGDLALQTRNLYGNQEGEE 577
           L SP I RS+TT   S     + V  HP S+L   F +T +  ++  T+  +G  +G++
Sbjct: 773 LSSPAISRSLTTTSSSSPKRRSNVTSHPSSVLRCVFFLTTSTSISFATKITFGQLQGQQ 831


>09_02_0564 + 10698710-10699294
          Length = 194

 Score = 29.1 bits (62), Expect = 5.4
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = +2

Query: 569 GEEEQRVPQVSPPHSMEFGSDNEHILGLDSGSVDSN 676
           G+EE RV  V      + GSDN  + G+  G  DS+
Sbjct: 126 GDEEDRVVVVGEERGEKLGSDNGCVEGIREGIADSD 161


>03_02_0569 -
           9528027-9529256,9530019-9530260,9530374-9531161,
           9531613-9531953,9532090-9532310,9532392-9532702,
           9532779-9533038,9533691-9533891,9533992-9534167,
           9534242-9534296,9535739-9536146
          Length = 1410

 Score = 28.7 bits (61), Expect = 7.1
 Identities = 16/43 (37%), Positives = 19/43 (44%)
 Frame = +2

Query: 485 PSILPGDFDITPAGDLALQTRNLYGNQEGEEEQRVPQVSPPHS 613
           P   P  +   PAGD  +  R   G   GEEE    +V PP S
Sbjct: 25  PPESPSPYGDGPAGDAGVGAREGEGLGPGEEEVEDDEVEPPPS 67


>02_02_0346 -
           9214365-9214583,9214830-9214919,9215012-9215177,
           9215601-9215911,9215944-9216566,9216779-9216968,
           9217096-9217197,9217285-9217425,9217815-9218411,
           9219126-9219286,9220709-9220824,9221538-9221654,
           9221746-9221808,9221879-9221949
          Length = 988

 Score = 28.7 bits (61), Expect = 7.1
 Identities = 18/43 (41%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
 Frame = +2

Query: 554 YGNQEGEE--EQRVPQVSPPHSMEFGSDNEHILGLDSGSVDSN 676
           YG Q+G E  E RVPQ  P    E G ++EH    + G  D N
Sbjct: 73  YGGQKGFEVRESRVPQ--PDGESEGGEEDEHDGESEGGEEDKN 113


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,202,362
Number of Sequences: 37544
Number of extensions: 476258
Number of successful extensions: 1159
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1157
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2706104940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)