Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP11_F_I11
         (942 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    25   1.3  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     25   1.3  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    23   4.0  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        23   5.3  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        23   5.3  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        23   5.3  

>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 24.6 bits (51), Expect = 1.3
 Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
 Frame = -1

Query: 729 ESSLRDKSNKP-RLCLGDMLESTEPLSSPRICSLSDPNSILCGGETCGTLC 580
           E S + K N P +  + D +   + +S   IC LS  N+ + GG     LC
Sbjct: 195 EGSQKRKFNVPLQPVVSDPIFDKKAMSDLVICKLSHSNASVAGGMEMILLC 245


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 24.6 bits (51), Expect = 1.3
 Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
 Frame = -1

Query: 729 ESSLRDKSNKP-RLCLGDMLESTEPLSSPRICSLSDPNSILCGGETCGTLC 580
           E S + K N P +  + D +   + +S   IC LS  N+ + GG     LC
Sbjct: 195 EGSQKRKFNVPLQPVVSDPIFDKKAMSDLVICKLSHSNASVAGGMEMILLC 245


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 23.0 bits (47), Expect = 4.0
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = -3

Query: 691 LFRRHVRVNRATIKSKNMFIIRSKLHTMW 605
           L RRH  +N  T  +  + ++   L T+W
Sbjct: 238 LLRRHYSMNSTTYVTLTIVLMTMTLMTLW 266


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.6 bits (46), Expect = 5.3
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +1

Query: 286 GRERLKCITAIGKCES 333
           GR+R +CI  +GK E+
Sbjct: 65  GRDRYECIEKVGKKEA 80


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.6 bits (46), Expect = 5.3
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +1

Query: 286 GRERLKCITAIGKCES 333
           GR+R +CI  +GK E+
Sbjct: 65  GRDRYECIEKVGKKEA 80


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.6 bits (46), Expect = 5.3
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +1

Query: 286 GRERLKCITAIGKCES 333
           GR+R +CI  +GK E+
Sbjct: 65  GRDRYECIEKVGKKEA 80


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 250,607
Number of Sequences: 438
Number of extensions: 5412
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 30839445
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)