Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP11_F_I08
         (902 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0519 - 19945456-19945653,19947110-19947112                       50   3e-06
11_06_0495 - 24319531-24320831,24320923-24321109,24322919-243230...    45   7e-05
09_03_0120 + 12502519-12503076                                         28   8.8  

>12_02_0519 - 19945456-19945653,19947110-19947112
          Length = 66

 Score = 50.0 bits (114), Expect = 3e-06
 Identities = 23/37 (62%), Positives = 26/37 (70%)
 Frame = +2

Query: 194 KNITMRGXVPKTTKEKEXQYPVAPWLLALFIFVVCGS 304
           KNIT RG VP+TT +K   YPV P +L  FIFVV GS
Sbjct: 17  KNITKRGSVPETTVKKGNDYPVGPMVLGFFIFVVIGS 53


>11_06_0495 -
           24319531-24320831,24320923-24321109,24322919-24323062,
           24324467-24324469
          Length = 544

 Score = 45.2 bits (102), Expect = 7e-05
 Identities = 21/38 (55%), Positives = 25/38 (65%)
 Frame = +2

Query: 179 TSLASKNITMRGXVPKTTKEKEXQYPVAPWLLALFIFV 292
           T+   KNIT RG VP+TT +K   YPV P +L  FIFV
Sbjct: 12  TAKFQKNITKRGSVPETTVKKGNDYPVGPLVLGFFIFV 49


>09_03_0120 + 12502519-12503076
          Length = 185

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 22/69 (31%), Positives = 31/69 (44%)
 Frame = -2

Query: 220 YXPPHCDVFTGETRWRXACAAXGPFCXVXKEIXQFXXKXKGREEPQTRNXA*HGEKRQKX 41
           + P H   F GE   R ACA   P+    KE+  +  +  GR E +    A   + R + 
Sbjct: 59  FSPAH---FEGEWDARDACARSEPYAPGEKEVG-YMDREMGRAEAEEVAAA-AADARVRA 113

Query: 40  KGRPESEAV 14
            GR E EA+
Sbjct: 114 PGRVEVEAL 122


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,764,865
Number of Sequences: 37544
Number of extensions: 334400
Number of successful extensions: 599
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 582
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 599
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2553813320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)