Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP11_F_I05
         (955 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0706 + 24457148-24458031,24458621-24458822,24458896-244590...    30   3.1  
12_01_0477 + 3742751-3745200,3747192-3747502,3747886-3748232           28   9.5  

>01_05_0706 +
           24457148-24458031,24458621-24458822,24458896-24459080,
           24459170-24459503,24459614-24459818,24460022-24460128,
           24460220-24460381
          Length = 692

 Score = 29.9 bits (64), Expect = 3.1
 Identities = 28/94 (29%), Positives = 41/94 (43%), Gaps = 1/94 (1%)
 Frame = -3

Query: 296 GNTGRLATLNSHVTPAWPVVGKCGSRTFQLAPVAVSPAVGTTNRPIIGGANTGTFSPQSA 117
           G   R +T +S +T A P    C S    +A  A  P     +RP + G+ TG +   S 
Sbjct: 118 GGGDRGSTASSPMTNALPAGNICPSGRVPVAAAAPPPP---RSRPDVLGSGTGNYGHGSI 174

Query: 116 GXRGGKIERLKSSLFSILNELNTPKS*G-FPIVS 18
              GG +   +SS+ S     + P+S   FP  S
Sbjct: 175 MRGGGGMAPARSSIDSSSFLGHAPRSPATFPAAS 208


>12_01_0477 + 3742751-3745200,3747192-3747502,3747886-3748232
          Length = 1035

 Score = 28.3 bits (60), Expect = 9.5
 Identities = 19/57 (33%), Positives = 24/57 (42%), Gaps = 1/57 (1%)
 Frame = -3

Query: 266 SHVTPAWPV-VGKCGSRTFQLAPVAVSPAVGTTNRPIIGGANTGTFSPQSAGXRGGK 99
           +H  PA  V   + G R+    P+ VSP V    R   GG   G       G RGG+
Sbjct: 24  NHRHPASRVGAARGGPRSDPATPIPVSPRVSVMRRGGGGGGGGGGGGGGGGGGRGGR 80


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,488,121
Number of Sequences: 37544
Number of extensions: 333843
Number of successful extensions: 858
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 787
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 855
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2752963900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)