Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP11_F_I04
         (930 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3A11.11c |||pyridoxal reductase |Schizosaccharomyces pombe|c...    26   6.6  
SPBC13G1.05 |||DUF747 family protein|Schizosaccharomyces pombe|c...    26   8.7  
SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|ch...    26   8.7  

>SPAC3A11.11c |||pyridoxal reductase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 334

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 18/62 (29%), Positives = 27/62 (43%)
 Frame = +1

Query: 394 ESQSNGVDNSNGTQKSQLVFHCQQAHGSPLGLISGFSNVKELYEKIAECYEFSPEDILFC 573
           E + NGV          LV H   AHG   G ++  ++++ L +K  +C E  P      
Sbjct: 182 EIEYNGVKKLCHDLSIPLVAHSPLAHGLLTGRVTTMADIENL-KKHHQCNEQPPSSTFSS 240

Query: 574 TL 579
           TL
Sbjct: 241 TL 242


>SPBC13G1.05 |||DUF747 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 649

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -1

Query: 846 CLFPNHILTIQFLNMISDLNMWY 778
           CLF NHIL+  F N    +  +Y
Sbjct: 283 CLFSNHILSFNFWNPAGWMTFFY 305


>SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 750

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 13/60 (21%), Positives = 24/60 (40%)
 Frame = +1

Query: 385 EDTESQSNGVDNSNGTQKSQLVFHCQQAHGSPLGLISGFSNVKELYEKIAECYEFSPEDI 564
           ED ++  + V   N  Q + + F       +PL  I      +E  E +   YE +  ++
Sbjct: 48  EDAKNMDSVVQKLNELQNNVVAFQKLLQEKTPLSSIQDLEGFREFMENLEHRYEMTVSEV 107


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,614,683
Number of Sequences: 5004
Number of extensions: 73330
Number of successful extensions: 197
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 191
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 197
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 471335896
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)