Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP11_F_I03
         (923 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|ch...    27   3.7  
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||...    27   3.7  
SPAC6B12.07c |||ubiquitin-protein ligase E3 |Schizosaccharomyces...    27   4.9  
SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence orphan|Sc...    27   4.9  
SPBC1539.09c |trp1||anthranilate synthase component II|Schizosac...    26   6.5  
SPAC20G8.08c |fft1||fun thirty related protein Fft1|Schizosaccha...    26   8.6  
SPAC19D5.02c |||peroxisomal membrane protein Pex22 |Schizosaccha...    26   8.6  
SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces po...    26   8.6  
SPAPB17E12.07c |sen2||tRNA-splicing endonuclease subunit Sen2|Sc...    26   8.6  

>SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 867

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 19/68 (27%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
 Frame = +3

Query: 321 TAVPKLQIQPPLQDVQLASPNTKLSVSEIDVQPLSSSSGLDLTQKVTYTQAQAEH-ISVM 497
           T+VP    + P+  +  ++P   L V+   ++PL S + +  + +V  TQA   H +   
Sbjct: 365 TSVPSGMSRHPML-MNPSTPEPSLGVNSPSLRPLQSLNNVQNSYRVASTQAPPPHPLRNY 423

Query: 498 TSPVGSLS 521
           TS   S+S
Sbjct: 424 TSDAESIS 431


>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 3227

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = -2

Query: 568  LYRNLFLGVAQTDIKSDNDPTGE 500
            LYRN  LG+ Q DI ++ND   E
Sbjct: 1836 LYRNSVLGIFQGDIVNENDENYE 1858


>SPAC6B12.07c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 456

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = +3

Query: 474 QAEHISVMTSPVGSLSDLISVCATPRKRFLYKQLLTARKVID 599
           Q E   ++ + +  LS  IS+ A+P  +  YK L   RK+ +
Sbjct: 183 QREQRKILFNAIDILSHEISLIASPNSKKKYKSLYCWRKIFE 224


>SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence
           orphan|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 776

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +3

Query: 567 KQLLTARKVIDNKSKKIQXLQKVNKRLKK 653
           KQL +A   +  ++K IQ L+  N+ LKK
Sbjct: 529 KQLKSANNTLHVRAKHIQILENTNQSLKK 557


>SPBC1539.09c |trp1||anthranilate synthase component
           II|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 759

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 15/29 (51%), Positives = 18/29 (62%), Gaps = 3/29 (10%)
 Frame = +3

Query: 450 QKVTYTQAQAEHISVMTSP---VGSLSDL 527
           Q +TY Q  A  ISV+T P    GSL+DL
Sbjct: 332 QALTYAQVGASVISVLTEPKWFKGSLNDL 360


>SPAC20G8.08c |fft1||fun thirty related protein
           Fft1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 944

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 17/88 (19%), Positives = 40/88 (45%), Gaps = 1/88 (1%)
 Frame = +3

Query: 273 DKSDISG-NTNRRRLVKTAVPKLQIQPPLQDVQLASPNTKLSVSEIDVQPLSSSSGLDLT 449
           +KS +   N  R+R V+    + Q + PL+ ++L+   T      +   P + ++  ++ 
Sbjct: 184 EKSSVDKENAKRKRYVEEGTKQGQKKKPLRVIELSDEETN-EDDLLGQSPTACTTDANID 242

Query: 450 QKVTYTQAQAEHISVMTSPVGSLSDLIS 533
             +     + E +S+ +S    + D +S
Sbjct: 243 NSIPENSDKIEEVSIESSGPSEVEDEMS 270


>SPAC19D5.02c |||peroxisomal membrane protein Pex22
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 223

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 11/28 (39%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
 Frame = +2

Query: 608 EKNSXIAKSEQETK-EKNQFFQKYGLFV 688
           E++  + + E E++ E+  FFQKYGL++
Sbjct: 173 EESPNVDEDELESEPEEKTFFQKYGLYL 200


>SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1396

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 13/24 (54%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
 Frame = +1

Query: 49  RLKHSQCK-DVSQCRSVHSKVAKI 117
           ++ HSQ K D+S C   HSKVA I
Sbjct: 144 KIAHSQFKADLSYCGEGHSKVATI 167


>SPAPB17E12.07c |sen2||tRNA-splicing endonuclease subunit
           Sen2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 380

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 14/45 (31%), Positives = 24/45 (53%)
 Frame = +3

Query: 507 VGSLSDLISVCATPRKRFLYKQLLTARKVIDNKSKKIQXLQKVNK 641
           +G   DL++   T R+RF  KQ    R   +N++++ Q L +  K
Sbjct: 100 LGFDEDLVAEEVTARRRFQRKQFKAQRAYRENRARERQLLLENGK 144


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,053,787
Number of Sequences: 5004
Number of extensions: 64680
Number of successful extensions: 190
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 183
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 190
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 467341524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)