Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP11_F_I03
         (923 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0421 + 3236798-3237144,3237356-3237441,3237741-3237895,323...    30   3.0  
07_03_0535 - 19198130-19198139,19199901-19199995,19200095-192001...    29   6.9  
11_06_0181 + 20985960-20987825,20987904-20989169                       28   9.1  

>11_01_0421 +
           3236798-3237144,3237356-3237441,3237741-3237895,
           3237971-3238035,3238180-3238363,3238785-3239048,
           3239141-3239224,3239727-3239984,3240214-3240472,
           3240550-3240755,3240896-3240946,3241041-3241337
          Length = 751

 Score = 29.9 bits (64), Expect = 3.0
 Identities = 25/80 (31%), Positives = 41/80 (51%), Gaps = 5/80 (6%)
 Frame = +3

Query: 354 LQDVQLASPNTKLSVSEIDVQPLSSSSGLDLTQ---KVTYTQAQAEHISVMTSPVGSLSD 524
           L D+   S N   S ++I +  LS    L+L Q   + + ++A+    S+    VGS S 
Sbjct: 362 LHDLIERSDNVVRSTNDILLYTLSKEDLLELFQAPVQNSSSRAELHRRSIAQMKVGSQSM 421

Query: 525 LIS--VCATPRKRFLYKQLL 578
           L +  +C TP+KR L + +L
Sbjct: 422 LKTETICITPKKRILTQIIL 441


>07_03_0535 -
           19198130-19198139,19199901-19199995,19200095-19200154,
           19200241-19200349,19200438-19200604,19200694-19200813,
           19200901-19200987,19201068-19201196,19201284-19201362,
           19201451-19201530,19201646-19201726,19201812-19201874,
           19201963-19202139,19202381-19202476,19202610-19202729,
           19202825-19202933,19203016-19203235,19203320-19203405,
           19203491-19203552,19203649-19203685,19203790-19203848,
           19203952-19204037,19204142-19204313
          Length = 767

 Score = 28.7 bits (61), Expect = 6.9
 Identities = 29/108 (26%), Positives = 51/108 (47%), Gaps = 7/108 (6%)
 Frame = +3

Query: 315 VKTAVPKLQIQPPLQDVQLASPNTKLSVS----EIDVQPLSSSSGL-DLTQKVTYTQAQA 479
           V ++ PK+Q  PP++ V       KL+V        VQ  +SS GL  LT    +  A  
Sbjct: 171 VASSTPKIQRPPPVKAVTTVPTCPKLTVKTEAFTPKVQATNSSRGLAPLTGSRAHPSALK 230

Query: 480 EHISVMTSPVGSLSDLIS-VCATPRKRFLYK-QLLTARKVIDNKSKKI 617
           + +SV  S +    +L++   AT       + Q +  +K+ D ++++I
Sbjct: 231 QSMSVKRSVIKCPRELLAGKAATAANEIAQENQAVKRQKLDDGRTRQI 278


>11_06_0181 + 20985960-20987825,20987904-20989169
          Length = 1043

 Score = 28.3 bits (60), Expect = 9.1
 Identities = 17/68 (25%), Positives = 31/68 (45%)
 Frame = +3

Query: 369 LASPNTKLSVSEIDVQPLSSSSGLDLTQKVTYTQAQAEHISVMTSPVGSLSDLISVCATP 548
           + S + K S+ +   Q  S     + TQ    T +   +++   +P  S+    ++C   
Sbjct: 116 ILSDHVKRSLYDTKRQCASREVAKEATQPPNKTDSNISNVAGSMTPSASVLVFWTICPHC 175

Query: 549 RKRFLYKQ 572
           +KRFLY Q
Sbjct: 176 QKRFLYYQ 183


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,820,360
Number of Sequences: 37544
Number of extensions: 388588
Number of successful extensions: 939
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 921
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 939
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2635816500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)