Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP11_F_I03
         (923 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    26   0.56 
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    24   1.7  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    23   5.2  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    22   9.0  

>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 25.8 bits (54), Expect = 0.56
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +1

Query: 358 RTYNWHHPIPNSQYLKL 408
           R  NWH PIP + + KL
Sbjct: 259 RFINWHEPIPEAYFPKL 275


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 24.2 bits (50), Expect = 1.7
 Identities = 14/46 (30%), Positives = 22/46 (47%)
 Frame = -2

Query: 493 TEICSAWAWV*VTFCVRSNPELDDRGCTSISDTESLVLGDANCTSC 356
           TEICS    + V   +++  E  D  C  +   +   +GDA C +C
Sbjct: 501 TEICSTATPMMVINMLQNLYEQFDSFCGQLDVYKVETIGDAYCVAC 546


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 22.6 bits (46), Expect = 5.2
 Identities = 7/19 (36%), Positives = 10/19 (52%)
 Frame = -3

Query: 663 NWFFSLVSCSLFAXFEFFS 607
           NW F  + C L+  F+  S
Sbjct: 106 NWSFGTIMCDLWVSFDVLS 124


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 21.8 bits (44), Expect = 9.0
 Identities = 11/35 (31%), Positives = 25/35 (71%), Gaps = 2/35 (5%)
 Frame = +1

Query: 247 IRLYVRIT-LIN-RIYPEILTDVVWLKQQFLNYRF 345
           ++L +R++ LI+  +  +ILT  VWL+ ++ +++F
Sbjct: 48  VKLGLRLSQLIDLNLKDQILTTNVWLEHEWQDHKF 82


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 201,129
Number of Sequences: 438
Number of extensions: 4238
Number of successful extensions: 20
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 30113811
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)