Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP11_F_I02
(963 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 36 0.006
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 35 0.015
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 34 0.034
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 33 0.045
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 31 0.24
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 28 2.3
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr... 27 3.0
SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces ... 27 5.2
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 27 5.2
SPBC119.05c |||Wiskott-Aldrich syndrome homolog binding protein ... 26 9.1
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc... 26 9.1
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 36.3 bits (80), Expect = 0.006
Identities = 38/155 (24%), Positives = 39/155 (25%), Gaps = 10/155 (6%)
Frame = +1
Query: 427 GXGXSGDFXXTXPGRPXXAXXGGXGFXPXXGGXXGPPXKPPXXP---GXXPGGPXGHQXX 597
G G S P P G P G PP PP G P +
Sbjct: 328 GNGSSNSSLPPPPPPPRSNAAGSIPLPPQ--GRSAPPPPPPRSAPSTGRQPPPLSSSRAV 385
Query: 598 PXXGEXXPXXXGXGGXAPXPLXX------PPXPLYXXKPXXXXGXXXXXTPPXXPPPXKX 759
P G A PL PP P P PP P
Sbjct: 386 SNPPAPPPAIPGRSAPALPPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAPPSLPMGAPA 445
Query: 760 PPXXPPGGXTGXP-PAXFRGXPPXPXPXXPPPXXP 861
P PP P PA PP P PP P
Sbjct: 446 APPLPPSAPIAPPLPAGMPAAPPLPPAAPAPPPAP 480
Score = 28.7 bits (61), Expect = 1.3
Identities = 20/64 (31%), Positives = 20/64 (31%)
Frame = +1
Query: 655 PLXXPPXPLYXXKPXXXXGXXXXXTPPXXPPPXKXPPXXPPGGXTGXPPAXFRGXPPXPX 834
P PP KP G PP PPP PP G PP PP P
Sbjct: 312 PPPPPPSRRNRGKPPIGNGSSNSSLPP--PPP---PPRSNAAGSIPLPPQGRSAPPPPPP 366
Query: 835 PXXP 846
P
Sbjct: 367 RSAP 370
Score = 25.8 bits (54), Expect = 9.1
Identities = 24/89 (26%), Positives = 26/89 (29%), Gaps = 2/89 (2%)
Frame = +1
Query: 637 GGXAPXPLXXPPXPLYXXKPXXXXGXXXXXTPPXXPP--PXKXPPXXPPGGXTGXPPAXF 810
G AP P P +P PP PP P + P PP G A
Sbjct: 357 GRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGRSAPALPPLGN-----ASR 411
Query: 811 RGXPPXPXPXXPPPXXPXXXXXXGXXXPP 897
PP P P P P PP
Sbjct: 412 TSTPPVPTP---PSLPPSAPPSLPPSAPP 437
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 35.1 bits (77), Expect = 0.015
Identities = 26/110 (23%), Positives = 27/110 (24%), Gaps = 1/110 (0%)
Frame = +1
Query: 535 PXKPPXXPGXXPGGPXGHQXXPXXGEXXPXXXGXGGXAPXPLXXPPXPLYXXKPXXXXGX 714
P P P G P P P G P P P+
Sbjct: 1046 PTSTPPVPKSSSGAPSAPPPVPAPSSEIPSIPAPSGAPPVPAPSGIPPVPKPSVAAPPVP 1105
Query: 715 XXXXTPPXXPPPXKXPPXXPPGGXTGXPPAXF-RGXPPXPXPXXPPPXXP 861
P P P PP P PP G PP P P P P
Sbjct: 1106 KPSVAVPPVPAPSGAPPVPKPS--VAAPPVPVPSGAPPVPKPSVAAPPVP 1153
Score = 34.7 bits (76), Expect = 0.020
Identities = 28/113 (24%), Positives = 30/113 (26%), Gaps = 3/113 (2%)
Frame = +1
Query: 532 PPXKPPXXPGXXPGGPXGHQXXPXXGEXXPXXXGXGGXAPXP---LXXPPXPLYXXKPXX 702
PP P P P P G P P + PP P+ P
Sbjct: 1083 PPVPAPSGIPPVPKPSVAAPPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVPSGAPPV 1142
Query: 703 XXGXXXXXTPPXXPPPXKXPPXXPPGGXTGXPPAXFRGXPPXPXPXXPPPXXP 861
P P P PP P PA G PP P P P P
Sbjct: 1143 PK---PSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVP 1192
Score = 34.7 bits (76), Expect = 0.020
Identities = 34/130 (26%), Positives = 35/130 (26%), Gaps = 12/130 (9%)
Frame = +1
Query: 508 PXXGGXXGPPXKPPXXPGXXPGGPXGHQXXPXXGEXXPXXXGXGGXAPXP---LXXPPXP 678
P PP P P G P P G P P + PP P
Sbjct: 1113 PVPAPSGAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVP 1172
Query: 679 L----YXXKPXXXXGXXXXXTPPXXPPPXKX----PPXXPPGGXTGXP-PAXFRGXPPXP 831
P G P PP K PP PP T P P G PP P
Sbjct: 1173 APSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPS--TAPPVPTPSAGLPPVP 1230
Query: 832 XPXXPPPXXP 861
P P P
Sbjct: 1231 VPTAKAPPVP 1240
Score = 34.3 bits (75), Expect = 0.026
Identities = 22/73 (30%), Positives = 24/73 (32%), Gaps = 2/73 (2%)
Frame = +1
Query: 649 PXPLXXPPXPL-YXXKPXXXXGXXXXXTPPXXPPPXKXPPXXPPGGXTGXPPAXF-RGXP 822
P P PP P+ P PP P P P P +G PP G P
Sbjct: 1035 PVPSTAPPVPIPTSTPPVPKSSSGAPSAPPPVPAPSSEIPSIP--APSGAPPVPAPSGIP 1092
Query: 823 PXPXPXXPPPXXP 861
P P P P P
Sbjct: 1093 PVPKPSVAAPPVP 1105
Score = 30.3 bits (65), Expect = 0.42
Identities = 28/111 (25%), Positives = 28/111 (25%), Gaps = 4/111 (3%)
Frame = +1
Query: 532 PPXKPPXXPGXXPGGPXGHQXXPXXGEXXPXXXGXG-GXAPXP---LXXPPXPLYXXKPX 699
PP P P G P P G P P PP P P
Sbjct: 1140 PPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPP 1199
Query: 700 XXXGXXXXXTPPXXPPPXKXPPXXPPGGXTGXPPAXFRGXPPXPXPXXPPP 852
PP PPP PP P P PP P P P
Sbjct: 1200 VPK--PSVGVPPV-PPPSTAPPVPTPSAGLPPVPVPTAKAPPVPAPSSEAP 1247
Score = 27.9 bits (59), Expect = 2.3
Identities = 23/85 (27%), Positives = 24/85 (28%), Gaps = 2/85 (2%)
Frame = +1
Query: 649 PXPLXXPPXPLYXXKPXXXXGXXXXXT--PPXXPPPXKXPPXXPPGGXTGXPPAXFRGXP 822
P P PP P KP + PP P PP P G P P
Sbjct: 1115 PAPSGAPPVP----KPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAA-P 1169
Query: 823 PXPXPXXPPPXXPXXXXXXGXXXPP 897
P P P P P PP
Sbjct: 1170 PVPAPSSGIPPVPKPAAGVPPVPPP 1194
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 33.9 bits (74), Expect = 0.034
Identities = 31/106 (29%), Positives = 32/106 (30%)
Frame = -2
Query: 845 GXXGXGXGGXPRKXAGGXPVXPPGGXXGGFXXGGGXXGGVXXXXXPXXXXGXXXYRGXGG 666
G G GG G G GGF GG GG P G + G GG
Sbjct: 162 GLGGLALGGLASHALGNL-FHHRGHNGGGFGGFGGGSGG-----PPPGPGGFGGFGGFGG 215
Query: 665 XXRGXGAXPPXPXXXGXXSPXXGXFWWPXGPPGXXPGXXGGXXGGP 528
G G G F G PG G GG GGP
Sbjct: 216 EGHHHGGHGGFGGGPGGFEGGPGGF---GGGPGGFGGGLGGFGGGP 258
Score = 29.5 bits (63), Expect = 0.74
Identities = 23/71 (32%), Positives = 23/71 (32%)
Frame = -2
Query: 941 GLGGXXPXXXXXXAXGGXXXPXFXXXXGXXGGGXXGXGXGGXPRKXAGGXPVXPPGGXXG 762
G GG P GG GG G G G P GG PGG G
Sbjct: 196 GSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPG-GFEGGPGGFGGG-----PGGFGG 249
Query: 761 GFXXGGGXXGG 729
G GG GG
Sbjct: 250 GLGGFGGGPGG 260
Score = 29.1 bits (62), Expect = 0.98
Identities = 31/95 (32%), Positives = 31/95 (32%), Gaps = 2/95 (2%)
Frame = -3
Query: 859 GXXGGXXXGXXGGXPPERXXGGXXXRPRGGXXGXFXEGXXXGGGFXXXXXPPXPXVXXGI 680
G G G GG PP GG GG G EG GG P G
Sbjct: 187 GGGFGGFGGGSGGPPP--GPGGF-----GGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGG 239
Query: 679 --GAXGGXXGGXGXFPPXPXXXXGXPPXLXXFGGP 581
G GG GG G F P G P GGP
Sbjct: 240 FGGGPGGFGGGLGGFGGGPGGFGGGP---GGHGGP 271
Score = 26.6 bits (56), Expect = 5.2
Identities = 13/32 (40%), Positives = 13/32 (40%)
Frame = +1
Query: 493 GXGFXPXXGGXXGPPXKPPXXPGXXPGGPXGH 588
G GF GG GPP P G G GH
Sbjct: 187 GGGFGGFGGGSGGPPPGPGGFGGFGGFGGEGH 218
Score = 26.6 bits (56), Expect = 5.2
Identities = 15/41 (36%), Positives = 15/41 (36%)
Frame = +1
Query: 466 GRPXXAXXGGXGFXPXXGGXXGPPXKPPXXPGXXPGGPXGH 588
G P G GF GG G PG GGP GH
Sbjct: 228 GGPGGFEGGPGGFGGGPGGFGGGLGGFGGGPGGFGGGPGGH 268
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 33.5 bits (73), Expect = 0.045
Identities = 18/49 (36%), Positives = 18/49 (36%), Gaps = 6/49 (12%)
Frame = +1
Query: 733 PXXPPPXKXPPXXPPGGXTGXPPAXFRGXPPXPXP------XXPPPXXP 861
P PPP P P PPA G PP P P PPP P
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPP 780
Score = 31.9 bits (69), Expect = 0.14
Identities = 17/49 (34%), Positives = 17/49 (34%), Gaps = 1/49 (2%)
Frame = +1
Query: 754 KXPPXXPPGGXTGXP-PAXFRGXPPXPXPXXPPPXXPXXXXXXGXXXPP 897
K PP PP P PA PP P PPP P PP
Sbjct: 730 KSPPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPP 778
Score = 28.7 bits (61), Expect = 1.3
Identities = 17/53 (32%), Positives = 17/53 (32%), Gaps = 2/53 (3%)
Frame = +3
Query: 525 PRPSXXTPXXPGXXPRGAXGPPKXXXXGGXPXXXX--GXGGXXPXPPXXPPXA 677
P P P P PP GG P G G P PP PP A
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPA 784
Score = 28.7 bits (61), Expect = 1.3
Identities = 15/42 (35%), Positives = 15/42 (35%), Gaps = 2/42 (4%)
Frame = +1
Query: 730 PPXXPPPXKXPPXXP--PGGXTGXPPAXFRGXPPXPXPXXPP 849
P P P PP P G PP G P P P PP
Sbjct: 742 PTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783
Score = 26.6 bits (56), Expect = 5.2
Identities = 17/53 (32%), Positives = 19/53 (35%)
Frame = +1
Query: 646 APXPLXXPPXPLYXXKPXXXXGXXXXXTPPXXPPPXKXPPXXPPGGXTGXPPA 804
AP P+ PP P+ P P PPP PP GG PA
Sbjct: 747 APIPVP-PPAPIMGGPPPPPPPPGVAGAGPPPPPPP--PPAVSAGGSRYYAPA 796
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 31.1 bits (67), Expect = 0.24
Identities = 23/76 (30%), Positives = 24/76 (31%), Gaps = 1/76 (1%)
Frame = +1
Query: 637 GGXAPX-PLXXPPXPLYXXKPXXXXGXXXXXTPPXXPPPXKXPPXXPPGGXTGXPPAXFR 813
GG AP P+ PP P P PPP PP P G PP
Sbjct: 1679 GGMAPAHPVSTPPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPM--PAGPPSAPP---- 1732
Query: 814 GXPPXPXPXXPPPXXP 861
PP P P P
Sbjct: 1733 --PPLPASSAPSVPNP 1746
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 27.9 bits (59), Expect = 2.3
Identities = 22/77 (28%), Positives = 24/77 (31%), Gaps = 5/77 (6%)
Frame = +1
Query: 646 APXPLXXPPXPLYXXKPXXXXGXXXXXTPP---XXPP-PXKXPPXXPPGGXTGXPPAXFR 813
AP PP P +P PP PP P K PP P A +
Sbjct: 123 APPSAPAPPTPQSELRPPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVK 182
Query: 814 GXPPXP-XPXXPPPXXP 861
P P P PP P
Sbjct: 183 SPPSAPSLPSAVPPMPP 199
>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 305
Score = 27.5 bits (58), Expect = 3.0
Identities = 16/44 (36%), Positives = 16/44 (36%)
Frame = -2
Query: 860 GXXGGGXXGXGXGGXPRKXAGGXPVXPPGGXXGGFXXGGGXXGG 729
G GG G G R GG GG GG G G GG
Sbjct: 9 GGRGGSRGGRGGFNGGRGGFGGGRGGARGGGRGGARGGRGGRGG 52
>SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 644
Score = 26.6 bits (56), Expect = 5.2
Identities = 12/26 (46%), Positives = 12/26 (46%)
Frame = -2
Query: 824 GGXPRKXAGGXPVXPPGGXXGGFXXG 747
GG P GG P PGG GG G
Sbjct: 612 GGAPGGAPGGMPGGAPGGAPGGADNG 637
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 26.6 bits (56), Expect = 5.2
Identities = 9/17 (52%), Positives = 10/17 (58%)
Frame = +1
Query: 730 PPXXPPPXKXPPXXPPG 780
PP PP + PP PPG
Sbjct: 15 PPGFEPPSQPPPPPPPG 31
Score = 26.2 bits (55), Expect = 6.9
Identities = 10/24 (41%), Positives = 10/24 (41%)
Frame = +1
Query: 730 PPXXPPPXKXPPXXPPGGXTGXPP 801
PP PPP PP P PP
Sbjct: 5 PPGNPPPPPPPPGFEPPSQPPPPP 28
>SPBC119.05c |||Wiskott-Aldrich syndrome homolog binding protein
Lsb1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 296
Score = 25.8 bits (54), Expect = 9.1
Identities = 12/42 (28%), Positives = 15/42 (35%), Gaps = 2/42 (4%)
Frame = +1
Query: 742 PPPXKXPPXXPPGGXTGXPPAXFR--GXPPXPXPXXPPPXXP 861
PPP PP + PP ++ PP P P P
Sbjct: 206 PPPPPPQQNYPPAASSSAPPMQYQQTAYPPQQAPYPPVQAYP 247
>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 587
Score = 25.8 bits (54), Expect = 9.1
Identities = 14/49 (28%), Positives = 16/49 (32%), Gaps = 2/49 (4%)
Frame = +3
Query: 636 GGXXPXPPXX--PPXAPIPXXTXGXGGXXXXXNPPPXXXPSXKXPXXPP 776
G P PP PP P+P G + PP P P P
Sbjct: 488 GTSAPLPPTTFAPPGVPLPPIPGAPGMPNLNMSQPPMVPPGMALPPGMP 536
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,060,283
Number of Sequences: 5004
Number of extensions: 25495
Number of successful extensions: 183
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 493304942
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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