Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP11_F_H24
(969 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 31 0.32
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 30 0.43
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 29 0.75
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 28 1.7
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 28 2.3
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 30.7 bits (66), Expect = 0.32
Identities = 22/77 (28%), Positives = 22/77 (28%), Gaps = 1/77 (1%)
Frame = -3
Query: 937 GXXGGGXXGXGXXXXXXXXXGXGXXXGX-GXXXGXXGGXXXXXXGXXXXXXGGGGGXXXX 761
G GG G G G G G G G GG G G GGG
Sbjct: 195 GGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGPGGFGGGLGGF 254
Query: 760 XXGXGXXXXXPXXXGXP 710
G G P G P
Sbjct: 255 GGGPGGFGGGPGGHGGP 271
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 30.3 bits (65), Expect = 0.43
Identities = 17/70 (24%), Positives = 17/70 (24%)
Frame = +2
Query: 746 PLPXXXXXXXPPXPXXXXPXPXXXXXXPXXXPPXXXXPXPXPXXXPPXXXPXXXXXXXPX 925
P P P P P P P P P P PP P P
Sbjct: 1095 PKPSVAAPPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPA 1154
Query: 926 PXXXXXXPPP 955
P P P
Sbjct: 1155 PSGAPPVPKP 1164
Score = 27.9 bits (59), Expect = 2.3
Identities = 15/61 (24%), Positives = 15/61 (24%)
Frame = +2
Query: 746 PLPXXXXXXXPPXPXXXXPXPXXXXXXPXXXPPXXXXPXPXPXXXPPXXXPXXXXXXXPX 925
P P P P P P P P P P PP P P
Sbjct: 1172 PAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLPPVPV 1231
Query: 926 P 928
P
Sbjct: 1232 P 1232
Score = 27.1 bits (57), Expect = 4.0
Identities = 16/62 (25%), Positives = 17/62 (27%), Gaps = 1/62 (1%)
Frame = +2
Query: 746 PLPXXXXXXXPPXPXXXXPX-PXXXXXXPXXXPPXXXXPXPXPXXXPPXXXPXXXXXXXP 922
P+P P P P P P P P P P PP P P
Sbjct: 1113 PVPAPSGAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVP 1172
Query: 923 XP 928
P
Sbjct: 1173 AP 1174
Score = 27.1 bits (57), Expect = 4.0
Identities = 15/61 (24%), Positives = 15/61 (24%)
Frame = +2
Query: 746 PLPXXXXXXXPPXPXXXXPXPXXXXXXPXXXPPXXXXPXPXPXXXPPXXXPXXXXXXXPX 925
P P P P P P PP P P P P P P
Sbjct: 1162 PKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPT 1221
Query: 926 P 928
P
Sbjct: 1222 P 1222
Score = 26.6 bits (56), Expect = 5.3
Identities = 13/48 (27%), Positives = 13/48 (27%)
Frame = +2
Query: 785 PXXXXPXPXXXXXXPXXXPPXXXXPXPXPXXXPPXXXPXXXXXXXPXP 928
P P P P P P P P PP P P P
Sbjct: 1060 PSAPPPVPAPSSEIPSIPAPSGAPPVPAPSGIPPVPKPSVAAPPVPKP 1107
Score = 25.8 bits (54), Expect = 9.2
Identities = 18/75 (24%), Positives = 18/75 (24%), Gaps = 3/75 (4%)
Frame = +1
Query: 712 GXPXXXGXXXPPPXXXXXXXXPPXPXXXX---PXPXXXPXPPXXXPPXXXXPXXXPXXPP 882
G P PP PP P P P PP P P P P
Sbjct: 1081 GAPPVPAPSGIPPVPKPSVAAPPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVPSGAP 1140
Query: 883 XXPXXXXXPXPXXXP 927
P P P
Sbjct: 1141 PVPKPSVAAPPVPAP 1155
Score = 25.8 bits (54), Expect = 9.2
Identities = 17/72 (23%), Positives = 18/72 (25%), Gaps = 2/72 (2%)
Frame = +2
Query: 746 PLPXXXXXXXPPXPXXXXPX--PXXXXXXPXXXPPXXXXPXPXPXXXPPXXXPXXXXXXX 919
P+P P P P P P P P P PP P
Sbjct: 1151 PVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPV 1210
Query: 920 PXPXXXXXXPPP 955
P P P P
Sbjct: 1211 PPPSTAPPVPTP 1222
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 29.5 bits (63), Expect = 0.75
Identities = 16/52 (30%), Positives = 16/52 (30%)
Frame = +1
Query: 775 PPXPXXXXPXPXXXPXPPXXXPPXXXXPXXXPXXPPXXPXXXXXPXPXXXPP 930
PP P P P P P P P P PP P P PP
Sbjct: 734 PPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPP--PPPGVAGAGPPPPPPPPP 783
Score = 28.7 bits (61), Expect = 1.3
Identities = 17/53 (32%), Positives = 17/53 (32%), Gaps = 1/53 (1%)
Frame = +3
Query: 774 PPPPPXXXXXXP-XXXXXXPPXXPXXXPXPXXXPXPXXXXXXXXXPXPXXPPP 929
PPPPP P PP P P P P P P PPP
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPPAPIMGGPP--PPPPPPGVAGAGPPPPPPPPP 783
Score = 28.3 bits (60), Expect = 1.7
Identities = 14/50 (28%), Positives = 14/50 (28%)
Frame = +1
Query: 742 PPPXXXXXXXXPPXPXXXXPXPXXXPXPPXXXPPXXXXPXXXPXXPPXXP 891
PPP P P P PP PP P PP P
Sbjct: 734 PPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783
Score = 26.6 bits (56), Expect = 5.3
Identities = 10/24 (41%), Positives = 11/24 (45%)
Frame = +1
Query: 232 PPXGPVXXXPPGXPPXAGXXGDPP 303
PP P+ PP PP G G P
Sbjct: 752 PPPAPIMGGPPPPPPPPGVAGAGP 775
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 28.3 bits (60), Expect = 1.7
Identities = 18/69 (26%), Positives = 18/69 (26%)
Frame = +1
Query: 703 PXXGXPXXXGXXXPPPXXXXXXXXPPXPXXXXPXPXXXPXPPXXXPPXXXXPXXXPXXPP 882
P P PP PP P P P P PP P P PP
Sbjct: 391 PPPAIPGRSAPALPPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAPP--SLPMGAPAAPP 448
Query: 883 XXPXXXXXP 909
P P
Sbjct: 449 LPPSAPIAP 457
Score = 25.8 bits (54), Expect = 9.2
Identities = 17/65 (26%), Positives = 17/65 (26%), Gaps = 3/65 (4%)
Frame = +3
Query: 777 PPPPXXXXXXPXXXXXXPPXXPXXXPXPXXXPXPXXXXXXXXXPXP---XXPPPXXPXXX 947
PP P P PP P P P P P PP P
Sbjct: 415 PPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAP 474
Query: 948 XPPXA 962
PP A
Sbjct: 475 APPPA 479
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 27.9 bits (59), Expect = 2.3
Identities = 15/60 (25%), Positives = 15/60 (25%)
Frame = +2
Query: 785 PXXXXPXPXXXXXXPXXXPPXXXXPXPXPXXXPPXXXPXXXXXXXPXPXXXXXXPPPXXP 964
P P P P PP P P PP P P PP P
Sbjct: 140 PTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPSLPSAVPPMPP 199
Score = 27.1 bits (57), Expect = 4.0
Identities = 15/51 (29%), Positives = 15/51 (29%)
Frame = +1
Query: 778 PXPXXXXPXPXXXPXPPXXXPPXXXXPXXXPXXPPXXPXXXXXPXPXXXPP 930
P P P PP PP P P P P P P PP
Sbjct: 124 PPSAPAPPTPQSELRPPTSAPPRPSIPPPSPASAPPIP-SKAPPIPSSLPP 173
Score = 26.6 bits (56), Expect = 5.3
Identities = 16/61 (26%), Positives = 16/61 (26%), Gaps = 1/61 (1%)
Frame = +2
Query: 776 PPXPXXXXPXPXXXXXXPXXXPP-XXXXPXPXPXXXPPXXXPXXXXXXXPXPXXXXXXPP 952
PP P P P P PP P P P P P PP
Sbjct: 144 PPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPSLPSAVPPMPPKVPP 203
Query: 953 P 955
P
Sbjct: 204 P 204
Score = 25.8 bits (54), Expect = 9.2
Identities = 18/75 (24%), Positives = 18/75 (24%), Gaps = 5/75 (6%)
Frame = +3
Query: 747 PXPXXXXXXPPPPPXXXXXXPXXXXXXPPXXPXXXPXPXXXPXPXXXXXXXXXP-----X 911
P P P P P PP P P P P P
Sbjct: 131 PTPQSELRPPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPSL 190
Query: 912 PXXPPPXXPXXXXPP 956
P PP P PP
Sbjct: 191 PSAVPPMPPKVPPPP 205
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.316 0.154 0.548
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,639,684
Number of Sequences: 5004
Number of extensions: 21729
Number of successful extensions: 109
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 71
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 497299314
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
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