Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP11_F_H24
         (969 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ438610-1|CAD27473.1|  838|Anopheles gambiae putative microtubu...    29   0.21 
AY027891-1|AAK15783.1|  801|Anopheles gambiae collagen IV alpha ...    24   7.9  

>AJ438610-1|CAD27473.1|  838|Anopheles gambiae putative microtubule
           binding protein protein.
          Length = 838

 Score = 29.1 bits (62), Expect = 0.21
 Identities = 15/54 (27%), Positives = 15/54 (27%)
 Frame = +1

Query: 730 GXXXPPPXXXXXXXXPPXPXXXXPXPXXXPXPPXXXPPXXXXPXXXPXXPPXXP 891
           G   PP         PP P    P P   P P     P    P   P   P  P
Sbjct: 196 GNVGPPRTGTPTQPQPPRPGGMYPQPPGVPMPMRPQMPPGAVPGMQPGMQPRPP 249



 Score = 25.8 bits (54), Expect = 1.9
 Identities = 16/64 (25%), Positives = 16/64 (25%)
 Frame = +3

Query: 747 PXPXXXXXXPPPPPXXXXXXPXXXXXXPPXXPXXXPXPXXXPXPXXXXXXXXXPXPXXPP 926
           P P      P P P      P      PP  P   P     P P           P   P
Sbjct: 75  PQPTVLAASPAPQPSLAPVVPSSVVTAPPARPSQPPTTRFAPEP-RAEVKFVPSVPLKTP 133

Query: 927 PXXP 938
           P  P
Sbjct: 134 PVRP 137



 Score = 24.2 bits (50), Expect = 6.0
 Identities = 20/70 (28%), Positives = 20/70 (28%), Gaps = 6/70 (8%)
 Frame = +1

Query: 691 RXGXPXXGXPXXXGXXXPPPXXXXXXXXPPXPXXXXP--XPXXXPXPP----XXXPPXXX 852
           R G P    P   G   P P        P  P    P   P   P PP       PP   
Sbjct: 202 RTGTPTQPQPPRPGGMYPQPPGVPMPMRPQMPPGAVPGMQPGMQPRPPSAQGMQRPPMMG 261

Query: 853 XPXXXPXXPP 882
            P   P  PP
Sbjct: 262 QP--PPIRPP 269


>AY027891-1|AAK15783.1|  801|Anopheles gambiae collagen IV alpha 1
           chain precursor protein.
          Length = 801

 Score = 23.8 bits (49), Expect = 7.9
 Identities = 13/38 (34%), Positives = 13/38 (34%)
 Frame = -1

Query: 300 GVPXXPGXRGXPRXXXXNXAXGGXXPPGXGPXXPXAXP 187
           GVP  PG  G P         G    P  GP  P   P
Sbjct: 450 GVPGRPGPEGMPGDKGDKGESGSVGMP--GPQGPRGYP 485


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.316    0.154    0.548 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 488,111
Number of Sequences: 2352
Number of extensions: 8640
Number of successful extensions: 13
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 563,979
effective HSP length: 65
effective length of database: 411,099
effective search space used: 105652443
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)