Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP11_F_H22
         (942 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC83.05 |||mitochondrial RNA-binding protein |Schizosaccharomy...    27   2.9  
SPAPB1A11.02 |||esterase/lipase |Schizosaccharomyces pombe|chr 1...    26   8.8  

>SPBC83.05 |||mitochondrial RNA-binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 773

 Score = 27.5 bits (58), Expect = 2.9
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = -3

Query: 202 DGAPYLSTPAQTLSGVICDRERSFRTLSATL 110
           D A YL+T  Q   GVI D E+S   L+  L
Sbjct: 739 DRAHYLTTRIQKNQGVITDNEKSIERLTEAL 769


>SPAPB1A11.02 |||esterase/lipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 339

 Score = 25.8 bits (54), Expect = 8.8
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +1

Query: 154 LLRIMFGLVCSSTALHLPQELKIPIIWNASVNS 252
           +L   FG VC S    L  E K P+  N +++S
Sbjct: 115 ILTPKFGCVCVSVDYRLAPESKFPVAHNDAIDS 147


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,213,994
Number of Sequences: 5004
Number of extensions: 59407
Number of successful extensions: 147
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 479324640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)