Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP11_F_H20
         (947 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000298-11|AAM97960.1|  518|Caenorhabditis elegans Prion-like-(...    30   2.1  
AF000298-10|AAM97961.1|  539|Caenorhabditis elegans Prion-like-(...    30   2.1  
AF000298-8|AAC48255.2|  524|Caenorhabditis elegans Prion-like-(q...    30   2.1  
Z83219-3|CAD57687.1|  965|Caenorhabditis elegans Hypothetical pr...    26   5.3  
U10438-9|AAU87834.1|  616|Caenorhabditis elegans Hypothetical pr...    26   5.5  

>AF000298-11|AAM97960.1|  518|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform b protein.
          Length = 518

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 21/76 (27%), Positives = 25/76 (32%), Gaps = 2/76 (2%)
 Frame = +2

Query: 659 PPPPXXXXXQXPPXXXKXGXPXXXXXPF*XP*KCXXPP--SXGGXXKTXXXFPPXXKKXX 832
           PPPP       PP   + G P     P   P     PP  + G         PP   +  
Sbjct: 280 PPPPPAGGSPPPP---RAGSPPPPPPPRGSPPTGSLPPPQAGGSPPPAGTGSPPPPPRQK 336

Query: 833 XXAXXXEPPXXAPPXG 880
             A    PP  +PP G
Sbjct: 337 RQAPERSPPTGSPPTG 352



 Score = 28.7 bits (61), Expect = 6.4
 Identities = 13/38 (34%), Positives = 13/38 (34%)
 Frame = +1

Query: 625 GXPKNPXEXXXPPPPXKXXXPXPPXXXXXXGTXXXPXP 738
           G P  P     PPPP     P PP       T   P P
Sbjct: 278 GSPPPPPAGGSPPPPRAGSPPPPPPPRGSPPTGSLPPP 315


>AF000298-10|AAM97961.1|  539|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform c protein.
          Length = 539

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 21/76 (27%), Positives = 25/76 (32%), Gaps = 2/76 (2%)
 Frame = +2

Query: 659 PPPPXXXXXQXPPXXXKXGXPXXXXXPF*XP*KCXXPP--SXGGXXKTXXXFPPXXKKXX 832
           PPPP       PP   + G P     P   P     PP  + G         PP   +  
Sbjct: 301 PPPPPAGGSPPPP---RAGSPPPPPPPRGSPPTGSLPPPQAGGSPPPAGTGSPPPPPRQK 357

Query: 833 XXAXXXEPPXXAPPXG 880
             A    PP  +PP G
Sbjct: 358 RQAPERSPPTGSPPTG 373



 Score = 28.7 bits (61), Expect = 6.4
 Identities = 13/38 (34%), Positives = 13/38 (34%)
 Frame = +1

Query: 625 GXPKNPXEXXXPPPPXKXXXPXPPXXXXXXGTXXXPXP 738
           G P  P     PPPP     P PP       T   P P
Sbjct: 299 GSPPPPPAGGSPPPPRAGSPPPPPPPRGSPPTGSLPPP 336


>AF000298-8|AAC48255.2|  524|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform a protein.
          Length = 524

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 21/76 (27%), Positives = 25/76 (32%), Gaps = 2/76 (2%)
 Frame = +2

Query: 659 PPPPXXXXXQXPPXXXKXGXPXXXXXPF*XP*KCXXPP--SXGGXXKTXXXFPPXXKKXX 832
           PPPP       PP   + G P     P   P     PP  + G         PP   +  
Sbjct: 286 PPPPPAGGSPPPP---RAGSPPPPPPPRGSPPTGSLPPPQAGGSPPPAGTGSPPPPPRQK 342

Query: 833 XXAXXXEPPXXAPPXG 880
             A    PP  +PP G
Sbjct: 343 RQAPERSPPTGSPPTG 358



 Score = 28.7 bits (61), Expect = 6.4
 Identities = 13/38 (34%), Positives = 13/38 (34%)
 Frame = +1

Query: 625 GXPKNPXEXXXPPPPXKXXXPXPPXXXXXXGTXXXPXP 738
           G P  P     PPPP     P PP       T   P P
Sbjct: 284 GSPPPPPAGGSPPPPRAGSPPPPPPPRGSPPTGSLPPP 321


>Z83219-3|CAD57687.1|  965|Caenorhabditis elegans Hypothetical
           protein C31C9.6 protein.
          Length = 965

 Score = 25.8 bits (54), Expect(2) = 5.3
 Identities = 13/40 (32%), Positives = 15/40 (37%), Gaps = 2/40 (5%)
 Frame = +1

Query: 658 PPPPXKXXXPXPPXXXXXXGTXXXPXPXLXPLKMXS--PP 771
           PPPP +   P P            P P L P+   S  PP
Sbjct: 467 PPPPSRIPNPSPSPQPAEVSKSPPPPPPLPPIATPSSVPP 506



 Score = 21.4 bits (43), Expect(2) = 5.3
 Identities = 7/13 (53%), Positives = 7/13 (53%)
 Frame = +1

Query: 631 PKNPXEXXXPPPP 669
           PK P     PPPP
Sbjct: 426 PKTPTRVAPPPPP 438


>U10438-9|AAU87834.1|  616|Caenorhabditis elegans Hypothetical
           protein B0280.13 protein.
          Length = 616

 Score = 25.8 bits (54), Expect(2) = 5.5
 Identities = 13/40 (32%), Positives = 15/40 (37%), Gaps = 2/40 (5%)
 Frame = +1

Query: 658 PPPPXKXXXPXPPXXXXXXGTXXXPXPXLXPLKMXS--PP 771
           PPPP +   P P            P P L P+   S  PP
Sbjct: 474 PPPPSRIPNPSPSPQPAEVSKSPPPPPPLPPIATPSSVPP 513



 Score = 21.4 bits (43), Expect(2) = 5.5
 Identities = 7/13 (53%), Positives = 7/13 (53%)
 Frame = +1

Query: 631 PKNPXEXXXPPPP 669
           PK P     PPPP
Sbjct: 433 PKTPTRVAPPPPP 445


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,002,363
Number of Sequences: 27780
Number of extensions: 155112
Number of successful extensions: 460
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 216
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 394
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2454664212
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)