Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP11_F_H19
         (892 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    28   0.13 
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    23   4.9  
AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    23   4.9  

>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 27.9 bits (59), Expect = 0.13
 Identities = 11/22 (50%), Positives = 17/22 (77%)
 Frame = +1

Query: 625 DAIALFVTIIXCNKQXYNTIAS 690
           ++IALF+++I  N + YN IAS
Sbjct: 4   ESIALFISLIILNDEIYNIIAS 25


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = -2

Query: 261 ARKIISPLETLFLGGVQITLMFLCWATF 178
           +R+I S    + +    + L F+CWA F
Sbjct: 259 SRQIQSRKSVIKMLSAVVILFFICWAPF 286


>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 8/26 (30%), Positives = 15/26 (57%)
 Frame = +1

Query: 283 VCHPSLGVGQHQALPRQAIKLSQKNM 360
           +C P L +    A  +QA+++S  N+
Sbjct: 429 ICKPKLKIADLSAHDKQAVRMSALNV 454


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 198,630
Number of Sequences: 438
Number of extensions: 3837
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 28783482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)