Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP11_F_H18
         (918 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC16E8.09 |scd1|ral1|RhoGEF Scd1|Schizosaccharomyces pombe|chr...    29   0.92 
SPAC1F3.09 |mug161||CwfJ family protein|Schizosaccharomyces pomb...    27   3.7  

>SPAC16E8.09 |scd1|ral1|RhoGEF Scd1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 872

 Score = 29.1 bits (62), Expect = 0.92
 Identities = 16/40 (40%), Positives = 22/40 (55%)
 Frame = +3

Query: 399 VLTTENASTNVFPPTSWSNQSSKSTMHTVTSKSGTNVLTS 518
           +L T +   NV  PTS S+ SSKS+  T T+   T   T+
Sbjct: 587 LLRTHSLDENVNSPTSISSPSSKSSPFTKTTSKDTKSATT 626


>SPAC1F3.09 |mug161||CwfJ family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 561

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 11/40 (27%), Positives = 26/40 (65%)
 Frame = +2

Query: 398 GTYYGERVYKRIPPDQLVEPIFQEYYAHSDIKEWNKRANI 517
           G+Y  E+ Y+  PP++  + + ++ +  SD+++ +KR +I
Sbjct: 122 GSYNEEKYYQ--PPEKFEQSLNEKCFHRSDVQKLSKRCDI 159


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,773,683
Number of Sequences: 5004
Number of extensions: 54733
Number of successful extensions: 186
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 179
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 186
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 466510270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)