Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP11_F_H17
         (798 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    27   2.4  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    27   3.1  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    26   7.2  

>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 10/22 (45%), Positives = 10/22 (45%)
 Frame = +3

Query: 582 PPPXXXXXXXXPPPXXXPPPPP 647
           PPP        PP    PPPPP
Sbjct: 9   PPPPPPPPGFEPPSQPPPPPPP 30



 Score = 27.5 bits (58), Expect = 2.4
 Identities = 10/22 (45%), Positives = 10/22 (45%)
 Frame = +1

Query: 583 PPPXXXXXXXXPPPXXXPPPPP 648
           PPP        PP    PPPPP
Sbjct: 9   PPPPPPPPGFEPPSQPPPPPPP 30



 Score = 26.6 bits (56), Expect = 4.1
 Identities = 10/23 (43%), Positives = 10/23 (43%)
 Frame = +1

Query: 586 PPXXXXXXXXPPPXXXPPPPPXG 654
           PP         PP   PPPPP G
Sbjct: 9   PPPPPPPPGFEPPSQPPPPPPPG 31


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 14/38 (36%), Positives = 14/38 (36%)
 Frame = +3

Query: 582 PPPXXXXXXXXPPPXXXPPPPPXGGXXFFFXGGXXPPP 695
           PPP        P P   PPP P         GG  PPP
Sbjct: 735 PPPAVIVPTPAPAPIPVPPPAP-------IMGGPPPPP 765



 Score = 26.6 bits (56), Expect = 4.1
 Identities = 12/41 (29%), Positives = 14/41 (34%)
 Frame = +3

Query: 582 PPPXXXXXXXXPPPXXXPPPPPXGGXXFFFXGGXXPPPLXK 704
           PPP        PPP   PPP    G   ++       P  K
Sbjct: 764 PPPPPGVAGAGPPPPPPPPPAVSAGGSRYYAPAPQAEPEPK 804



 Score = 26.2 bits (55), Expect = 5.4
 Identities = 11/22 (50%), Positives = 11/22 (50%)
 Frame = +1

Query: 583 PPPXXXXXXXXPPPXXXPPPPP 648
           PPP        PPP   PPPPP
Sbjct: 764 PPPPPGVAGAGPPPP--PPPPP 783


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 10/23 (43%), Positives = 10/23 (43%)
 Frame = +1

Query: 577  SXPPPXXXXXXXXPPPXXXPPPP 645
            S  PP        PPP   PPPP
Sbjct: 1696 SAAPPQMSAPTPPPPPMSVPPPP 1718


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,835,305
Number of Sequences: 5004
Number of extensions: 27710
Number of successful extensions: 91
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 68
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 389395636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)