Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP11_F_H16
(915 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC306.08c |||malate dehydrogenase|Schizosaccharomyces pombe|ch... 185 7e-48
SPAC186.08c |||L-lactate dehydrogenase |Schizosaccharomyces pomb... 60 4e-10
SPAC23H3.05c |swd1||COMPASS complex subunit Swd1|Schizosaccharom... 28 1.6
SPBC3B8.07c |dsd1|SDCB3B8.07c|dihydroceramide delta-4 desaturase... 27 3.7
SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor Sp... 27 4.9
SPAC11D3.06 |||MatE family transporter|Schizosaccharomyces pombe... 26 6.5
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 26 8.6
SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyc... 26 8.6
>SPCC306.08c |||malate dehydrogenase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 341
Score = 185 bits (451), Expect = 7e-48
Identities = 94/175 (53%), Positives = 122/175 (69%), Gaps = 2/175 (1%)
Frame = +1
Query: 181 KNFSTTSQRNFKXXXXXXXXXIGQPLALLLKQNPLVTRLALYDIAPVTPGVAADLSHMNT 360
++FSTTS R FK IGQPL++LLK N V+ LAL+DI PGVAAD+ H+NT
Sbjct: 19 RSFSTTSSRAFKVAVLGAGGGIGQPLSMLLKLNDKVSELALFDIRGA-PGVAADIGHINT 77
Query: 361 PAKVSGHKGPEE-LSAAIKDADVVVIPAGVPRKPGMTRDDLFNTNASIVRDIALSIAQNA 537
+ V G+ ++ L A+ ADVV+IPAGVPRKPGMTRDDLF TNASIVRD+A + +
Sbjct: 78 TSNVVGYAPDDKGLEKALNGADVVIIPAGVPRKPGMTRDDLFATNASIVRDLAFAAGETC 137
Query: 538 PKAIVAIITNPVNSTVPIASEVLKKAGVYDPNRVLGVTTLDVVRAATFVGEI-NG 699
P+A ++TNPVNSTVPI + L++ GV+ P + GVTTLD VRA+ F ++ NG
Sbjct: 138 PEAKYLVVTNPVNSTVPIFKKALERVGVHQPKHLFGVTTLDSVRASRFTSQVTNG 192
Score = 65.7 bits (153), Expect = 9e-12
Identities = 36/64 (56%), Positives = 43/64 (67%)
Frame = +2
Query: 722 VPVIGGHSGITIIPILXQCQPALKLSXPXKIKXLTERIXXAGTEXVKAKAGGGSXTLSMA 901
+PV+GGHSG TI+P+L Q ++L+ K L RI G E VKAKAG GS TLSMA
Sbjct: 199 IPVVGGHSGATIVPLLSQ--GGVELTGE-KRDALIHRIQFGGDEVVKAKAGAGSATLSMA 255
Query: 902 YAGA 913
YAGA
Sbjct: 256 YAGA 259
>SPAC186.08c |||L-lactate dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 330
Score = 60.1 bits (139), Expect = 4e-10
Identities = 57/184 (30%), Positives = 82/184 (44%), Gaps = 8/184 (4%)
Frame = +1
Query: 175 GAKNFSTTSQRN--FKXXXXXXXXX--IGQPLALLLKQNPLVTRLALYDI-APVTPGVAA 339
G+K FS S R+ FK +G A L + L + + D+ G A
Sbjct: 4 GSKVFSNDSVRSSSFKSIKIVIVGAGNVGSTTAFTLLLSGLAAEIVIIDLNKKKAEGEAM 63
Query: 340 DLSHMNTPAKVSGHKGPEELS--AAIKDADVVVIPAGVPRKPGMTRDDLFNTNASIVRDI 513
DL+H A H+ L KDA VVI AG +KPG TR DL N SI ++I
Sbjct: 64 DLNH----AAPLSHETRVYLGDYKDCKDATAVVITAGKNQKPGETRMDLLKANISIFKEI 119
Query: 514 ALSIAQNAPKAIVAIITNPVNSTVPIASEVLKKAGVYDPNRVLGV-TTLDVVRAATFVGE 690
+ + AI+ + TNPV+ + LK G + RV+G T +D R +G+
Sbjct: 120 LREVTKYTKDAILLVATNPVD---VLTYATLKLTG-FPAERVIGSGTIIDTARFQYLIGK 175
Query: 691 INGV 702
+ G+
Sbjct: 176 LYGL 179
>SPAC23H3.05c |swd1||COMPASS complex subunit
Swd1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 398
Score = 28.3 bits (60), Expect = 1.6
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = -1
Query: 531 LSNGQSNVTDNGSISVE*VITGHSRFTGYSCW 436
L NG + D + SV V+TGH+R CW
Sbjct: 43 LVNGSVVIWDLSTFSVSRVLTGHTRAIQSVCW 74
>SPBC3B8.07c |dsd1|SDCB3B8.07c|dihydroceramide delta-4
desaturase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 362
Score = 27.1 bits (57), Expect = 3.7
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = +3
Query: 159 PCCTKWCKELFHHITEEL*SGGRWCR 236
P C WC ++ IT+ + G WCR
Sbjct: 319 PDCKSWCGIIYQFITDS--NVGMWCR 342
>SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor
Spt6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1365
Score = 26.6 bits (56), Expect = 4.9
Identities = 16/54 (29%), Positives = 23/54 (42%)
Frame = +1
Query: 16 PSHYREFLKILMLSSKGREGQVEIVQIYTYIHVKQTTKMFSRALKPAALAVQNG 177
P RE L+ L G + ++ + +TK F R P+ LAV NG
Sbjct: 642 PDAIRETLRSRYLDELGMRCRNQLFSRLDQAPYEPSTKNFDRGTIPSVLAVSNG 695
>SPAC11D3.06 |||MatE family transporter|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 455
Score = 26.2 bits (55), Expect = 6.5
Identities = 15/36 (41%), Positives = 18/36 (50%)
Frame = +1
Query: 301 LYDIAPVTPGVAADLSHMNTPAKVSGHKGPEELSAA 408
L + APV G A S + V+G GP ELS A
Sbjct: 12 LINSAPVILGYALQNSLQTSSVIVTGRLGPSELSVA 47
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 25.8 bits (54), Expect = 8.6
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +1
Query: 625 DPNRVLGVTTLDVVRAATFVGEINGV 702
D R LG+ D++R V E+NGV
Sbjct: 835 DTLRTLGLKEGDIIRVMNHVNELNGV 860
>SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 489
Score = 25.8 bits (54), Expect = 8.6
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +3
Query: 147 KTCRPCCTKWCKELFHHITEEL*SGGRWCRRWY 245
K C+ C + C+ +HHI E+L CRR Y
Sbjct: 33 KPCQ-CGYRVCRFCWHHIKEDLNGRCPACRRLY 64
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,242,456
Number of Sequences: 5004
Number of extensions: 66697
Number of successful extensions: 175
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 464508080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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