Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP11_F_H15
         (933 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0083 + 631196-631675                                             29   4.0  
12_02_1174 - 26696869-26698191                                         28   9.2  
02_04_0382 - 22501041-22501279,22501717-22501810                       28   9.2  

>01_01_0083 + 631196-631675
          Length = 159

 Score = 29.5 bits (63), Expect = 4.0
 Identities = 13/36 (36%), Positives = 15/36 (41%)
 Frame = -2

Query: 617 PPXXGGXXXXPXFXXXXGFFXXGGXGXXPXXPPPSP 510
           PP  GG    P +    G    GG    P  PPP+P
Sbjct: 79  PPQGGGGGYIPYYQPPAGGGGGGGGFNYPAPPPPNP 114


>12_02_1174 - 26696869-26698191
          Length = 440

 Score = 28.3 bits (60), Expect = 9.2
 Identities = 13/46 (28%), Positives = 17/46 (36%)
 Frame = +2

Query: 743 PPPQKKKXXKXXLQWGGEPPPXXXXXXPRXSPPQKTPXXXXPSXXP 880
           PPP+        +Q   +PPP      P   PP + P    P   P
Sbjct: 163 PPPRPPSVKPPVVQPKPQPPPSLQPPSPPPPPPTRPPSVKPPVVQP 208


>02_04_0382 - 22501041-22501279,22501717-22501810
          Length = 110

 Score = 28.3 bits (60), Expect = 9.2
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -1

Query: 756 FWGGGXXXXXPPPPPP 709
           ++GGG     PPPPPP
Sbjct: 88  YYGGGGGYGKPPPPPP 103


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,064,049
Number of Sequences: 37544
Number of extensions: 412849
Number of successful extensions: 3546
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1423
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3153
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2670960720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)