Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP11_F_H15
(933 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical pr... 31 1.6
AL110477-13|CAB54337.2| 789|Caenorhabditis elegans Hypothetical... 31 1.6
AF230279-1|AAG16654.1| 789|Caenorhabditis elegans SWI3-like pro... 31 1.6
U55366-2|AAA97981.1| 156|Caenorhabditis elegans Hypothetical pr... 29 4.8
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 29 4.8
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 29 4.8
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 29 4.8
AC025721-11|AAK29900.1| 78|Caenorhabditis elegans Hypothetical... 29 6.3
>U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical
protein R04E5.8a protein.
Length = 997
Score = 30.7 bits (66), Expect = 1.6
Identities = 15/51 (29%), Positives = 20/51 (39%)
Frame = +2
Query: 743 PPPQKKKXXKXXLQWGGEPPPXXXXXXPRXSPPQKTPXXXXPSXXPXXXKK 895
PPP+K + G PPP PR PP+ P P P ++
Sbjct: 126 PPPRKSRAG------GSSPPPPPPPRVPRTPPPRSPPPRRPPMTPPSPQRR 170
>AL110477-13|CAB54337.2| 789|Caenorhabditis elegans Hypothetical
protein Y113G7B.23 protein.
Length = 789
Score = 30.7 bits (66), Expect = 1.6
Identities = 20/65 (30%), Positives = 26/65 (40%), Gaps = 2/65 (3%)
Frame = +2
Query: 713 GGGGGXXXXXPPPQKKKXXKXXLQWGGEPPPXXXXXXPRXSPP--QKTPXXXXPSXXPXX 886
G GG PPPQ ++ +GG PPP P PP Q+ P P P
Sbjct: 672 GPPGGGQGPPPPPQGQQY------YGGPPPPGQPYGPPGGYPPQQQRPPYQAQPYPGPPP 725
Query: 887 XKKXR 901
++ R
Sbjct: 726 PQQQR 730
>AF230279-1|AAG16654.1| 789|Caenorhabditis elegans SWI3-like
protein protein.
Length = 789
Score = 30.7 bits (66), Expect = 1.6
Identities = 20/65 (30%), Positives = 26/65 (40%), Gaps = 2/65 (3%)
Frame = +2
Query: 713 GGGGGXXXXXPPPQKKKXXKXXLQWGGEPPPXXXXXXPRXSPP--QKTPXXXXPSXXPXX 886
G GG PPPQ ++ +GG PPP P PP Q+ P P P
Sbjct: 672 GPPGGGQGPPPPPQGQQY------YGGPPPPGQPYGPPGGYPPQQQRPPYQAQPYPGPPP 725
Query: 887 XKKXR 901
++ R
Sbjct: 726 PQQQR 730
>U55366-2|AAA97981.1| 156|Caenorhabditis elegans Hypothetical
protein F41F3.3 protein.
Length = 156
Score = 29.1 bits (62), Expect = 4.8
Identities = 26/90 (28%), Positives = 27/90 (30%), Gaps = 4/90 (4%)
Frame = -3
Query: 751 GGGXAXGXXPPPPPXXXXXCXLFXGXVGKXFFXXXPPXFXXXXXAPPXXGDXXXXPPXXX 572
GGG G PPPPP C G G PP G PP
Sbjct: 22 GGGGGCGCAPPPPPPSPCGC----GGGGGLALPQLPPLSLPSLGG----GGGCCPPPAPA 73
Query: 571 XGGFFXXGV----XGXXPXXPPXXPXGGXF 494
GG GV G P P GG +
Sbjct: 74 CGGGCGGGVAPAPIGGGYAQAPQAPIGGGY 103
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 29.1 bits (62), Expect = 4.8
Identities = 20/69 (28%), Positives = 21/69 (30%)
Frame = -3
Query: 724 PPPPPXXXXXCXLFXGXVGKXFFXXXPPXFXXXXXAPPXXGDXXXXPPXXXXGGFFXXGV 545
PPPPP + G PP PP G PP GGF
Sbjct: 726 PPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGF----- 780
Query: 544 XGXXPXXPP 518
G P PP
Sbjct: 781 KGGPPPPPP 789
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 29.1 bits (62), Expect = 4.8
Identities = 20/69 (28%), Positives = 21/69 (30%)
Frame = -3
Query: 724 PPPPPXXXXXCXLFXGXVGKXFFXXXPPXFXXXXXAPPXXGDXXXXPPXXXXGGFFXXGV 545
PPPPP + G PP PP G PP GGF
Sbjct: 726 PPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGF----- 780
Query: 544 XGXXPXXPP 518
G P PP
Sbjct: 781 KGGPPPPPP 789
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 29.1 bits (62), Expect = 4.8
Identities = 20/69 (28%), Positives = 21/69 (30%)
Frame = -3
Query: 724 PPPPPXXXXXCXLFXGXVGKXFFXXXPPXFXXXXXAPPXXGDXXXXPPXXXXGGFFXXGV 545
PPPPP + G PP PP G PP GGF
Sbjct: 309 PPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGF----- 363
Query: 544 XGXXPXXPP 518
G P PP
Sbjct: 364 KGGPPPPPP 372
>AC025721-11|AAK29900.1| 78|Caenorhabditis elegans Hypothetical
protein Y48G8AL.12 protein.
Length = 78
Score = 28.7 bits (61), Expect = 6.3
Identities = 15/42 (35%), Positives = 15/42 (35%)
Frame = +2
Query: 710 GGGGGGXXXXXPPPQKKKXXKXXLQWGGEPPPXXXXXXPRXS 835
GGGGGG PPP GG PP P S
Sbjct: 23 GGGGGGCGCGAPPPPPACAPPPAPACGGGAPPPPAYAAPAPS 64
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,140,512
Number of Sequences: 27780
Number of extensions: 208134
Number of successful extensions: 1372
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 402
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1092
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2402214122
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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