Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP11_F_H14
         (932 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC4B3.14 |cwf20||complexed with Cdc5 protein Cwf20 |Schizosacc...    29   1.2  
SPBC14C8.07c |cdc18||MCM loader|Schizosaccharomyces pombe|chr 2|...    28   1.6  
SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3 Brl2|Schizosa...    27   3.8  
SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3 |Schiz...    27   5.0  
SPBP23A10.15c |qcr1|mas1|mitochondrial processing peptidase comp...    27   5.0  
SPBC1773.08c |||mannosyltransferase complex subunit |Schizosacch...    26   8.7  
SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex lar...    26   8.7  

>SPCC4B3.14 |cwf20||complexed with Cdc5 protein Cwf20
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 290

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 19/72 (26%), Positives = 32/72 (44%)
 Frame = +1

Query: 340 KWASSDNDFHNPDRSIASERFSTGENLYWYMTSNKNHKINPDSALESWFNEHENYKFAPL 519
           K + +D  F+  D  I++ERF + + L          ++ P S+  S  + +ENY     
Sbjct: 58  KSSFNDKTFNESD-VISNERFKSNDLLELLPAPKNQAELAPKSSKRSDLDLNENYLLPNN 116

Query: 520 KSSDFQKTGKKQ 555
             SD   TG  +
Sbjct: 117 SVSDLTSTGSSE 128


>SPBC14C8.07c |cdc18||MCM loader|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 577

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 13/43 (30%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
 Frame = -3

Query: 318 LIPNHXFHLG-RCRLSR*FT--LGYLFTPQIVTIDELSYIVAR 199
           ++ N   H+  +C L   FT     L+ P I+ +DE+ +++AR
Sbjct: 252 ILENEDHHINFQCELESHFTQSANELYNPVIIVLDEMDHLIAR 294


>SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3
           Brl2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 680

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -2

Query: 424 STSSRPLKTFRMLCSC 377
           STS+  LKTFR +C C
Sbjct: 612 STSAEELKTFRAMCKC 627


>SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1253

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +1

Query: 400 FSTGENLYWYMTSNKNHKINPDSALESWFNEHEN 501
           ++TG N +WY+    N    P +AL SW  EH N
Sbjct: 327 WTTG-NYHWYLKKEINI---PQNALISWHPEHAN 356


>SPBP23A10.15c |qcr1|mas1|mitochondrial processing peptidase complex
           beta subunit Qcr1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 457

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 13/47 (27%), Positives = 23/47 (48%)
 Frame = +1

Query: 262 GELSGQPAATQMKXMIWDKELAAKAAKWASSDNDFHNPDRSIASERF 402
           G+++ +  A     MIWDK++A  A        D++    SI+  R+
Sbjct: 411 GQITEKDVARVASEMIWDKDIAVSAVGSIEGLLDYNRIRSSISMNRW 457


>SPBC1773.08c |||mannosyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 391

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = +1

Query: 466 SALESWFNEHENYKFAPLKSSDFQKTGKKQIAHYT 570
           ++LE  FN H NY +  L    F +  K+ I   T
Sbjct: 64  NSLEKHFNRHFNYPYTFLNDEPFDEKFKETILKLT 98


>SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex large
           subunit Nuc1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1689

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = +1

Query: 205 DDIRQFVNGHNLRREQIAKGELSGQPAATQMKXMIWDKELA 327
           DD+R    G N RR+ +  G+  G  AA++   +  D  +A
Sbjct: 846 DDLRLDEQGDNWRRQLLENGKSFGLEAASEYVGLSTDSPIA 886


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,203,721
Number of Sequences: 5004
Number of extensions: 64089
Number of successful extensions: 158
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 473333082
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)