Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP11_F_H10
(982 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z98866-26|CAM33505.1| 559|Caenorhabditis elegans Hypothetical p... 36 0.033
AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical ... 35 0.077
AF025467-4|AAN65300.1| 1130|Caenorhabditis elegans Hypothetical ... 35 0.10
U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical pr... 34 0.18
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 33 0.41
U58755-7|AAB00696.1| 136|Caenorhabditis elegans Hypothetical pr... 33 0.41
U39852-7|AAK39260.1| 240|Caenorhabditis elegans Ground-like (gr... 33 0.41
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 33 0.41
AC084154-11|AAK29874.1| 350|Caenorhabditis elegans Hypothetical... 33 0.41
U58736-1|AAB00598.1| 302|Caenorhabditis elegans Dumpy : shorter... 31 0.95
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 31 0.95
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 31 0.95
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 31 0.95
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 31 1.3
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 31 1.3
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 31 1.3
U53333-2|AAA96155.1| 299|Caenorhabditis elegans Collagen protei... 31 1.7
AF410845-1|AAL76233.1| 299|Caenorhabditis elegans cuticular col... 31 1.7
AF025467-5|AAB71038.2| 1115|Caenorhabditis elegans Hypothetical ... 30 2.2
Z70205-10|CAA94122.2| 887|Caenorhabditis elegans Hypothetical p... 29 3.8
Z68003-5|CAA91979.2| 887|Caenorhabditis elegans Hypothetical pr... 29 3.8
Z93393-1|CAB07688.1| 497|Caenorhabditis elegans Hypothetical pr... 29 5.1
Z83219-3|CAD57687.1| 965|Caenorhabditis elegans Hypothetical pr... 29 6.7
Z78013-1|CAB01425.3| 1140|Caenorhabditis elegans Hypothetical pr... 29 6.7
U10438-9|AAU87834.1| 616|Caenorhabditis elegans Hypothetical pr... 29 6.7
U41543-12|AAZ91345.1| 401|Caenorhabditis elegans Groundhog (hed... 28 8.8
U41017-1|AAC48211.1| 343|Caenorhabditis elegans Hypothetical pr... 28 8.8
M80650-1|AAA27985.1| 298|Caenorhabditis elegans alpha-collagen ... 28 8.8
AF000193-3|AAB52890.1| 259|Caenorhabditis elegans Hypothetical ... 28 8.8
>Z98866-26|CAM33505.1| 559|Caenorhabditis elegans Hypothetical
protein Y49E10.29 protein.
Length = 559
Score = 36.3 bits (80), Expect = 0.033
Identities = 32/133 (24%), Positives = 40/133 (30%), Gaps = 1/133 (0%)
Frame = +3
Query: 576 QXPGPTXXLPRXXPRXAPXXPXPXPXAPTXXPMXPPRPA-HXLXXGXKSQXXRPPXXRXP 752
Q P + + R AP P P P PP+PA Q PP + P
Sbjct: 307 QQAPPKPAVQQAPTRAAPAPPKPAPQQAPPVQQNPPKPAVQQAQAPVVQQAPAPPVQQAP 366
Query: 753 PXPXPXXXXXAXASXPPETTPXXRXGPXYTPXXPPR*RTPXXXPTXXXXXXXPXXPXLPG 932
P P P + PP PP+ P P P P
Sbjct: 367 PKPTPQQAPPVRQN-PPMPAVQQAPSSQQATQAPPK-PAPQQAPPVQQNPPKP----TPS 420
Query: 933 XAVPAHKSAXASQ 971
A PA K+ +Q
Sbjct: 421 PAPPAQKAQPVTQ 433
>AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical
protein Y48G9A.4 protein.
Length = 1115
Score = 35.1 bits (77), Expect = 0.077
Identities = 24/91 (26%), Positives = 28/91 (30%)
Frame = +3
Query: 582 PGPTXXLPRXXPRXAPXXPXPXPXAPTXXPMXPPRPAHXLXXGXKSQXXRPPXXRXPPXP 761
P P P R + P P P + PP P L + PP P P
Sbjct: 511 PPPPAPGPHKEQRRSTSKDPPRPAPPPVSSIPPPPPIAGLLAANGTNVPIPP-----PPP 565
Query: 762 XPXXXXXAXASXPPETTPXXRXGPXYTPXXP 854
P + A PP P GP P P
Sbjct: 566 PPLPQNLSGAPPPPPPPPPMLGGPPPPPPPP 596
>AF025467-4|AAN65300.1| 1130|Caenorhabditis elegans Hypothetical
protein R148.3b protein.
Length = 1130
Score = 34.7 bits (76), Expect = 0.10
Identities = 27/90 (30%), Positives = 31/90 (34%), Gaps = 4/90 (4%)
Frame = +3
Query: 615 PRXAPXXPXPXPX-APTXXPMXPPRPAHXLXXGXKS--QXXRPPXXRXPPXPXPXXXXXA 785
P+ P P P AP P+ P P K Q + P PP P P A
Sbjct: 344 PKVEEPEPAPTPAPAPAEDPVVTPAPEELTGVCYKDDCQGLQTPPPPAPPPPAPAVPEEA 403
Query: 786 XASXP-PETTPXXRXGPXYTPXXPPR*RTP 872
A P PE P + P T PP P
Sbjct: 404 QAPTPAPEEAPEAQI-PAETAQIPPENAVP 432
>U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical
protein R04E5.8a protein.
Length = 997
Score = 33.9 bits (74), Expect = 0.18
Identities = 19/55 (34%), Positives = 19/55 (34%)
Frame = +3
Query: 603 PRXXPRXAPXXPXPXPXAPTXXPMXPPRPAHXLXXGXKSQXXRPPXXRXPPXPXP 767
P P P P P P PM PP P S R P R PP P P
Sbjct: 139 PPPPPPRVPRTPPPRSPPPRRPPMTPPSPQRRPPRTPPSPEPRNP-PRTPPSPIP 192
Score = 30.7 bits (66), Expect = 1.7
Identities = 24/84 (28%), Positives = 26/84 (30%)
Frame = +3
Query: 636 PXPXPXAPTXXPMXPPRPAHXLXXGXKSQXXRPPXXRXPPXPXPXXXXXAXASXPPETTP 815
P P P PP P G S PP R P P P PP T P
Sbjct: 111 PAPQHGDHEASPPPPPPPRKSRAGG--SSPPPPPPPRVPRTPPPRSPPPRR---PPMTPP 165
Query: 816 XXRXGPXYTPXXPPR*RTPXXXPT 887
+ P TP P P P+
Sbjct: 166 SPQRRPPRTPPSPEPRNPPRTPPS 189
Score = 30.3 bits (65), Expect = 2.2
Identities = 22/83 (26%), Positives = 24/83 (28%), Gaps = 2/83 (2%)
Frame = +2
Query: 590 HXXP-PAXGAPXRAPXPXPPXXXAHXXXHXPPXXSTXXXXGXEEPXXTPPTXXXTPXPXP 766
H P P G +P P PP + PP P PP P P
Sbjct: 108 HQVPAPQHGDHEASPPPPPPPRKSRAGGSSPPPPPPPRVPRTPPPRSPPPRRPPMTPPSP 167
Query: 767 TXRXXR-XRLXAPRNHPXATRXP 832
R R PRN P P
Sbjct: 168 QRRPPRTPPSPEPRNPPRTPPSP 190
Score = 29.5 bits (63), Expect = 3.8
Identities = 26/115 (22%), Positives = 32/115 (27%)
Frame = +2
Query: 599 PPAXGAPXRAPXPXPPXXXAHXXXHXPPXXSTXXXXGXEEPXXTPPTXXXTPXPXPTXRX 778
PP P P P H + P G + P +P P P R
Sbjct: 71 PPYPYQHPHQPPPAHPHHLQHPHPYAYPGYPVPGQEGHQVPAPQHGDHEASPPPPPPPRK 130
Query: 779 XRXRLXAPRNHPXATRXPXVHTXXPAXLKNPXPXTXXXXXXRPXXXPPTXGXSGP 943
R +P P R P + P P T RP PP+ P
Sbjct: 131 SRAGGSSP-PPPPPPRVPRTPPPRSPPPRRP-PMTPPSPQRRPPRTPPSPEPRNP 183
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 32.7 bits (71), Expect = 0.41
Identities = 29/118 (24%), Positives = 31/118 (26%), Gaps = 5/118 (4%)
Frame = +3
Query: 582 PGPTXXLPRXXPRXAPXX-----PXPXPXAPTXXPMXPPRPAHXLXXGXKSQXXRPPXXR 746
P P P PR P P P P P P P P + PP
Sbjct: 274 PPPMPPTPGMTPRPPPPPSSGMWPPPPPPPPGRTPGPPGMPG--MPPPPPPSRFGPPGMG 331
Query: 747 XPPXPXPXXXXXAXASXPPETTPXXRXGPXYTPXXPPR*RTPXXXPTXXXXXXXPXXP 920
P P P PP GP P PP P P+ P P
Sbjct: 332 GMPPPPPPGMRYPGGMPPPPPPRYPSAGPGMYPPPPP--SRPPAPPSGHGMIPPPPPP 387
Score = 32.3 bits (70), Expect = 0.54
Identities = 25/98 (25%), Positives = 29/98 (29%), Gaps = 6/98 (6%)
Frame = +3
Query: 585 GPTXXLPRXXPRXAPXXPXPXPXAPTXXPMXPPRPAHXL----XXGXKSQXXRPP--XXR 746
G +P P P P P P P P PP P+ + + PP
Sbjct: 258 GQYPPVPPPPPSVTPMPP-PMPPTPGMTPRPPPPPSSGMWPPPPPPPPGRTPGPPGMPGM 316
Query: 747 XPPXPXPXXXXXAXASXPPETTPXXRXGPXYTPXXPPR 860
PP P PP P R P PPR
Sbjct: 317 PPPPPPSRFGPPGMGGMPPPPPPGMRYPGGMPPPPPPR 354
>U58755-7|AAB00696.1| 136|Caenorhabditis elegans Hypothetical
protein C34D4.11 protein.
Length = 136
Score = 32.7 bits (71), Expect = 0.41
Identities = 35/111 (31%), Positives = 36/111 (32%), Gaps = 1/111 (0%)
Frame = -1
Query: 943 GTAXPG-SXGXXGWXXXXXXVGXWXGVL*RGGXXGVYXGPXRXXGVVSGGXEAXAXXSXX 767
G PG G GW G W G RGG G G G +GG
Sbjct: 42 GWGRPGWGGGGPGWGRGGGGSG-WGGG--RGGGWGNNGGGGNWGG--NGGGGNGGGGRGG 96
Query: 766 GXGXGGXLXXGGRXXWLFXPXXXXCAGRGGXMGXXVGAXGXGXGXXGAXRG 614
G G GG GG GRGG G G G G G G RG
Sbjct: 97 GGGGGGGRGGGG-------------GGRGGGGGGGGGRGGGGGGRGGGGRG 134
>U39852-7|AAK39260.1| 240|Caenorhabditis elegans Ground-like (grd
related) protein 6 protein.
Length = 240
Score = 32.7 bits (71), Expect = 0.41
Identities = 28/126 (22%), Positives = 33/126 (26%)
Frame = +3
Query: 603 PRXXPRXAPXXPXPXPXAPTXXPMXPPRPAHXLXXGXKSQXXRPPXXRXPPXPXPXXXXX 782
P PR P P P P PP PA Q PP PP P P
Sbjct: 33 PMCQPRMPCAAPMPMPMPMPVCPPPPPCPA---------QFCPPPPICPPPPPPPMPCPP 83
Query: 783 AXASXPPETTPXXRXGPXYTPXXPPR*RTPXXXPTXXXXXXXPXXPXLPGXAVPAHKSAX 962
P + P P + P P+ P +P +PA
Sbjct: 84 PPPPMPRPSCPCMMQRPSFYPSYVPQYYQPMMPQPMPTAGGCGGGAVVPSVRIPAQNDCC 143
Query: 963 ASQXXP 980
P
Sbjct: 144 CGCSSP 149
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 32.7 bits (71), Expect = 0.41
Identities = 29/118 (24%), Positives = 31/118 (26%), Gaps = 5/118 (4%)
Frame = +3
Query: 582 PGPTXXLPRXXPRXAPXX-----PXPXPXAPTXXPMXPPRPAHXLXXGXKSQXXRPPXXR 746
P P P PR P P P P P P P P + PP
Sbjct: 284 PPPMPPTPGMTPRPPPPPSSGMWPPPPPPPPGRTPGPPGMPG--MPPPPPPSRFGPPGMG 341
Query: 747 XPPXPXPXXXXXAXASXPPETTPXXRXGPXYTPXXPPR*RTPXXXPTXXXXXXXPXXP 920
P P P PP GP P PP P P+ P P
Sbjct: 342 GMPPPPPPGMRYPGGMPPPPPPRYPSAGPGMYPPPPP--SRPPAPPSGHGMIPPPPPP 397
Score = 32.3 bits (70), Expect = 0.54
Identities = 25/98 (25%), Positives = 29/98 (29%), Gaps = 6/98 (6%)
Frame = +3
Query: 585 GPTXXLPRXXPRXAPXXPXPXPXAPTXXPMXPPRPAHXL----XXGXKSQXXRPP--XXR 746
G +P P P P P P P P PP P+ + + PP
Sbjct: 268 GQYPPVPPPPPSVTPMPP-PMPPTPGMTPRPPPPPSSGMWPPPPPPPPGRTPGPPGMPGM 326
Query: 747 XPPXPXPXXXXXAXASXPPETTPXXRXGPXYTPXXPPR 860
PP P PP P R P PPR
Sbjct: 327 PPPPPPSRFGPPGMGGMPPPPPPGMRYPGGMPPPPPPR 364
>AC084154-11|AAK29874.1| 350|Caenorhabditis elegans Hypothetical
protein Y22D7AR.1 protein.
Length = 350
Score = 32.7 bits (71), Expect = 0.41
Identities = 20/85 (23%), Positives = 28/85 (32%)
Frame = +3
Query: 603 PRXXPRXAPXXPXPXPXAPTXXPMXPPRPAHXLXXGXKSQXXRPPXXRXPPXPXPXXXXX 782
P+ P+ P P P P P P P+P K + P + P P P
Sbjct: 203 PKPKPKPEPK-PKPKPE-PKPKPKPKPKPKPKPNPNPKPEPKPKPKPKPKPEPKPKTKLK 260
Query: 783 AXASXPPETTPXXRXGPXYTPXXPP 857
+ P+ P + P P P
Sbjct: 261 SEPKPKPKLKPKPKPNPKPEPNPMP 285
Score = 31.1 bits (67), Expect = 1.3
Identities = 21/89 (23%), Positives = 29/89 (32%)
Frame = +3
Query: 603 PRXXPRXAPXXPXPXPXAPTXXPMXPPRPAHXLXXGXKSQXXRPPXXRXPPXPXPXXXXX 782
P+ P+ P P P P P P P+P K + P + P P P
Sbjct: 171 PKPEPKPKPK-PDPKPK-PKPKPKPKPKPNPKPEPKPKPKPEPKPKPKPEPKPKPKPKPK 228
Query: 783 AXASXPPETTPXXRXGPXYTPXXPPR*RT 869
P P + P P P+ +T
Sbjct: 229 PKPKPNPNPKPEPKPKPKPKPKPEPKPKT 257
Score = 31.1 bits (67), Expect = 1.3
Identities = 21/86 (24%), Positives = 29/86 (33%)
Frame = +3
Query: 603 PRXXPRXAPXXPXPXPXAPTXXPMXPPRPAHXLXXGXKSQXXRPPXXRXPPXPXPXXXXX 782
P+ P+ P P P P P P P+P K++ P + P P
Sbjct: 221 PKPKPKPKPK-PKPNPN-PKPEPKPKPKPKPKPEPKPKTKLKSEPKPKPKLKPKPKPNPK 278
Query: 783 AXASXPPETTPXXRXGPXYTPXXPPR 860
+ PE P + P P PR
Sbjct: 279 PEPNPMPELKPKPKHKPNSRPKPNPR 304
Score = 30.3 bits (65), Expect = 2.2
Identities = 20/87 (22%), Positives = 26/87 (29%), Gaps = 1/87 (1%)
Frame = +3
Query: 603 PRXXPRXAPXX-PXPXPXAPTXXPMXPPRPAHXLXXGXKSQXXRPPXXRXPPXPXPXXXX 779
P+ P+ P P P P P P P+P K + P P P P
Sbjct: 163 PKPEPKPKPKPEPKPKPK-PDPKPKPKPKPKPKPKPNPKPEPKPKPKPEPKPKPKPEPKP 221
Query: 780 XAXASXPPETTPXXRXGPXYTPXXPPR 860
P+ P P P P+
Sbjct: 222 KPKPKPKPKPKPNPNPKPEPKPKPKPK 248
Score = 29.5 bits (63), Expect = 3.8
Identities = 17/56 (30%), Positives = 20/56 (35%), Gaps = 1/56 (1%)
Frame = +3
Query: 603 PRXXPRXAPXX-PXPXPXAPTXXPMXPPRPAHXLXXGXKSQXXRPPXXRXPPXPXP 767
P+ P+ P P P P P P P+P H K P R P P P
Sbjct: 263 PKPKPKLKPKPKPNPKPE-PNPMPELKPKPKHKPNSRPKPNPRPKPKPRSKPNPKP 317
Score = 29.1 bits (62), Expect = 5.1
Identities = 20/86 (23%), Positives = 25/86 (29%), Gaps = 1/86 (1%)
Frame = +3
Query: 603 PRXXPRXAPXX-PXPXPXAPTXXPMXPPRPAHXLXXGXKSQXXRPPXXRXPPXPXPXXXX 779
P+ P+ P P P P P P P+P K + P + P P P
Sbjct: 167 PKPKPKPEPKPKPKPDPK-PKPKPKPKPKPKPNPKPEPKPKPKPEPKPKPKPEPKPKPKP 225
Query: 780 XAXASXPPETTPXXRXGPXYTPXXPP 857
P P P P P
Sbjct: 226 KPKPKPKPNPNPKPEPKPKPKPKPKP 251
>U58736-1|AAB00598.1| 302|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 3 protein.
Length = 302
Score = 31.5 bits (68), Expect = 0.95
Identities = 28/121 (23%), Positives = 31/121 (25%)
Frame = +3
Query: 582 PGPTXXLPRXXPRXAPXXPXPXPXAPTXXPMXPPRPAHXLXXGXKSQXXRPPXXRXPPXP 761
PGP R P P P P PP+P PP + P P
Sbjct: 116 PGPPGRDGRPGAPGRPGNPGPPGRDGALLPGPPPKPPCQKCPPGPPGPAGPPGPKGLPGP 175
Query: 762 XPXXXXXAXASXPPETTPXXRXGPXYTPXXPPR*RTPXXXPTXXXXXXXPXXPXLPGXAV 941
P P GP P P + P P P P PG
Sbjct: 176 QGDAGTSGQDGVPGLPGPPGPSGPQGAPGVPGE-KGPTGEPGKVINGAPPGPPGPPGPPG 234
Query: 942 P 944
P
Sbjct: 235 P 235
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 31.5 bits (68), Expect = 0.95
Identities = 27/105 (25%), Positives = 29/105 (27%), Gaps = 2/105 (1%)
Frame = +3
Query: 636 PXPXPXAP--TXXPMXPPRPAHXLXXGXKSQXXRPPXXRXPPXPXPXXXXXAXASXPPET 809
P P P P T P PP P PP PP P P + PP
Sbjct: 713 PPPPPGLPPITGGPPPPPPPGGL-----------PPITGGPPPPPPPGGLPPISGGPPPP 761
Query: 810 TPXXRXGPXYTPXXPPR*RTPXXXPTXXXXXXXPXXPXLPGXAVP 944
P P P PP P P P +P P
Sbjct: 762 PPPPGGCPPPPPPPPPGGFKGGPPPPPPPGMFAPMAPVIPDYLPP 806
Score = 29.9 bits (64), Expect = 2.9
Identities = 22/79 (27%), Positives = 22/79 (27%), Gaps = 1/79 (1%)
Frame = +3
Query: 582 PGPTXXLPRXXPRXAPXXPXPXPXAP-TXXPMXPPRPAHXLXXGXKSQXXRPPXXRXPPX 758
P P LP P P P P T P PP P PP PP
Sbjct: 713 PPPPPGLP-PITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPP 771
Query: 759 PXPXXXXXAXASXPPETTP 815
P P PP P
Sbjct: 772 PPPPPPGGFKGGPPPPPPP 790
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 31.5 bits (68), Expect = 0.95
Identities = 27/105 (25%), Positives = 29/105 (27%), Gaps = 2/105 (1%)
Frame = +3
Query: 636 PXPXPXAP--TXXPMXPPRPAHXLXXGXKSQXXRPPXXRXPPXPXPXXXXXAXASXPPET 809
P P P P T P PP P PP PP P P + PP
Sbjct: 713 PPPPPGLPPITGGPPPPPPPGGL-----------PPITGGPPPPPPPGGLPPISGGPPPP 761
Query: 810 TPXXRXGPXYTPXXPPR*RTPXXXPTXXXXXXXPXXPXLPGXAVP 944
P P P PP P P P +P P
Sbjct: 762 PPPPGGCPPPPPPPPPGGFKGGPPPPPPPGMFAPMAPVIPDYLPP 806
Score = 29.9 bits (64), Expect = 2.9
Identities = 22/79 (27%), Positives = 22/79 (27%), Gaps = 1/79 (1%)
Frame = +3
Query: 582 PGPTXXLPRXXPRXAPXXPXPXPXAP-TXXPMXPPRPAHXLXXGXKSQXXRPPXXRXPPX 758
P P LP P P P P T P PP P PP PP
Sbjct: 713 PPPPPGLP-PITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPP 771
Query: 759 PXPXXXXXAXASXPPETTP 815
P P PP P
Sbjct: 772 PPPPPPGGFKGGPPPPPPP 790
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 31.5 bits (68), Expect = 0.95
Identities = 27/105 (25%), Positives = 29/105 (27%), Gaps = 2/105 (1%)
Frame = +3
Query: 636 PXPXPXAP--TXXPMXPPRPAHXLXXGXKSQXXRPPXXRXPPXPXPXXXXXAXASXPPET 809
P P P P T P PP P PP PP P P + PP
Sbjct: 296 PPPPPGLPPITGGPPPPPPPGGL-----------PPITGGPPPPPPPGGLPPISGGPPPP 344
Query: 810 TPXXRXGPXYTPXXPPR*RTPXXXPTXXXXXXXPXXPXLPGXAVP 944
P P P PP P P P +P P
Sbjct: 345 PPPPGGCPPPPPPPPPGGFKGGPPPPPPPGMFAPMAPVIPDYLPP 389
Score = 29.9 bits (64), Expect = 2.9
Identities = 22/79 (27%), Positives = 22/79 (27%), Gaps = 1/79 (1%)
Frame = +3
Query: 582 PGPTXXLPRXXPRXAPXXPXPXPXAP-TXXPMXPPRPAHXLXXGXKSQXXRPPXXRXPPX 758
P P LP P P P P T P PP P PP PP
Sbjct: 296 PPPPPGLP-PITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPP 354
Query: 759 PXPXXXXXAXASXPPETTP 815
P P PP P
Sbjct: 355 PPPPPPGGFKGGPPPPPPP 373
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 31.1 bits (67), Expect = 1.3
Identities = 25/95 (26%), Positives = 30/95 (31%), Gaps = 7/95 (7%)
Frame = +3
Query: 582 PGPTXXLPRXXPRXAPXXPX-----PXPXAPTXXPMXPPR--PAHXLXXGXKSQXXRPPX 740
P P P P +P P P P A + P PPR P ++ PP
Sbjct: 265 PPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPPPPPPRGSPPTGSLPPPQAGGSPPPA 324
Query: 741 XRXPPXPXPXXXXXAXASXPPETTPXXRXGPXYTP 845
P P P A PP +P P P
Sbjct: 325 GTGSPPPPPRQKRQAPERSPPTGSPPTGSPPTGRP 359
Score = 30.3 bits (65), Expect = 2.2
Identities = 20/84 (23%), Positives = 26/84 (30%), Gaps = 2/84 (2%)
Frame = +3
Query: 615 PRXAPXXPXPXPXAP--TXXPMXPPRPAHXLXXGXKSQXXRPPXXRXPPXPXPXXXXXAX 788
P +P P P +P PP PA ++ PP PP P
Sbjct: 233 PAGSPPPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPP 292
Query: 789 ASXPPETTPXXRXGPXYTPXXPPR 860
+ P P R P PP+
Sbjct: 293 RAGSPPPPPPPRGSPPTGSLPPPQ 316
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 31.1 bits (67), Expect = 1.3
Identities = 25/95 (26%), Positives = 30/95 (31%), Gaps = 7/95 (7%)
Frame = +3
Query: 582 PGPTXXLPRXXPRXAPXXPX-----PXPXAPTXXPMXPPR--PAHXLXXGXKSQXXRPPX 740
P P P P +P P P P A + P PPR P ++ PP
Sbjct: 286 PPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPPPPPPRGSPPTGSLPPPQAGGSPPPA 345
Query: 741 XRXPPXPXPXXXXXAXASXPPETTPXXRXGPXYTP 845
P P P A PP +P P P
Sbjct: 346 GTGSPPPPPRQKRQAPERSPPTGSPPTGSPPTGRP 380
Score = 30.3 bits (65), Expect = 2.2
Identities = 20/84 (23%), Positives = 26/84 (30%), Gaps = 2/84 (2%)
Frame = +3
Query: 615 PRXAPXXPXPXPXAP--TXXPMXPPRPAHXLXXGXKSQXXRPPXXRXPPXPXPXXXXXAX 788
P +P P P +P PP PA ++ PP PP P
Sbjct: 254 PAGSPPPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPP 313
Query: 789 ASXPPETTPXXRXGPXYTPXXPPR 860
+ P P R P PP+
Sbjct: 314 RAGSPPPPPPPRGSPPTGSLPPPQ 337
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 31.1 bits (67), Expect = 1.3
Identities = 25/95 (26%), Positives = 30/95 (31%), Gaps = 7/95 (7%)
Frame = +3
Query: 582 PGPTXXLPRXXPRXAPXXPX-----PXPXAPTXXPMXPPR--PAHXLXXGXKSQXXRPPX 740
P P P P +P P P P A + P PPR P ++ PP
Sbjct: 271 PPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPPPPPPRGSPPTGSLPPPQAGGSPPPA 330
Query: 741 XRXPPXPXPXXXXXAXASXPPETTPXXRXGPXYTP 845
P P P A PP +P P P
Sbjct: 331 GTGSPPPPPRQKRQAPERSPPTGSPPTGSPPTGRP 365
Score = 30.3 bits (65), Expect = 2.2
Identities = 20/84 (23%), Positives = 26/84 (30%), Gaps = 2/84 (2%)
Frame = +3
Query: 615 PRXAPXXPXPXPXAP--TXXPMXPPRPAHXLXXGXKSQXXRPPXXRXPPXPXPXXXXXAX 788
P +P P P +P PP PA ++ PP PP P
Sbjct: 239 PAGSPPPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPP 298
Query: 789 ASXPPETTPXXRXGPXYTPXXPPR 860
+ P P R P PP+
Sbjct: 299 RAGSPPPPPPPRGSPPTGSLPPPQ 322
>U53333-2|AAA96155.1| 299|Caenorhabditis elegans Collagen protein
34 protein.
Length = 299
Score = 30.7 bits (66), Expect = 1.7
Identities = 26/99 (26%), Positives = 28/99 (28%), Gaps = 2/99 (2%)
Frame = +3
Query: 642 PXPXAPTXXPMXPPRPAHXLXXGXKSQXXRPPXXRXPP-XPXPXXXXXAXASXPP-ETTP 815
P P P P P RP G RPP P P P PP P
Sbjct: 102 PGPPGPAGTPGKPGRPGKPGAPGLPGNPGRPPQQPCEPITPPPCKPCPQGPPGPPGPPGP 161
Query: 816 XXRXGPXYTPXXPPR*RTPXXXPTXXXXXXXPXXPXLPG 932
G +P P + P P P P PG
Sbjct: 162 PGDSGEPGSPGLPGQDAAP-GEPGPKGPPGPPGAPGAPG 199
>AF410845-1|AAL76233.1| 299|Caenorhabditis elegans cuticular
collagen RAM-4 protein.
Length = 299
Score = 30.7 bits (66), Expect = 1.7
Identities = 26/99 (26%), Positives = 28/99 (28%), Gaps = 2/99 (2%)
Frame = +3
Query: 642 PXPXAPTXXPMXPPRPAHXLXXGXKSQXXRPPXXRXPP-XPXPXXXXXAXASXPP-ETTP 815
P P P P P RP G RPP P P P PP P
Sbjct: 102 PGPPGPAGTPGKPGRPGKPGAPGLPGNPGRPPQQPCEPITPPPCKPCPQGPPGPPGPPGP 161
Query: 816 XXRXGPXYTPXXPPR*RTPXXXPTXXXXXXXPXXPXLPG 932
G +P P + P P P P PG
Sbjct: 162 PGDSGEPGSPGLPGQDAAP-GEPGPKGPPGPPGAPGAPG 199
>AF025467-5|AAB71038.2| 1115|Caenorhabditis elegans Hypothetical
protein R148.3a protein.
Length = 1115
Score = 30.3 bits (65), Expect = 2.2
Identities = 22/78 (28%), Positives = 24/78 (30%), Gaps = 1/78 (1%)
Frame = +3
Query: 642 PXPXAPTXXPMXPPRPAHXLXXGXKSQXXRPPXXRXPPXPXPXXXXXAXASXP-PETTPX 818
P P P P PA + P PP P P A A P PE P
Sbjct: 344 PKVEEPEPAPTPAPAPAEDPVVTPAPEELTTPPPPAPPPPAPAVPEEAQAPTPAPEEAPE 403
Query: 819 XRXGPXYTPXXPPR*RTP 872
+ P T PP P
Sbjct: 404 AQI-PAETAQIPPENAVP 420
>Z70205-10|CAA94122.2| 887|Caenorhabditis elegans Hypothetical
protein E02H4.3a protein.
Length = 887
Score = 29.5 bits (63), Expect = 3.8
Identities = 18/71 (25%), Positives = 23/71 (32%)
Frame = +3
Query: 603 PRXXPRXAPXXPXPXPXAPTXXPMXPPRPAHXLXXGXKSQXXRPPXXRXPPXPXPXXXXX 782
P P P P P AP P+ PA S RPP + P
Sbjct: 231 PEANPAPVPTATKPSPFAPAIAPLRDGAPAQPPAPIQASAPLRPPVAKQNSLQKPPEPKR 290
Query: 783 AXASXPPETTP 815
+ + PP+ P
Sbjct: 291 SVGA-PPKALP 300
>Z68003-5|CAA91979.2| 887|Caenorhabditis elegans Hypothetical
protein E02H4.3a protein.
Length = 887
Score = 29.5 bits (63), Expect = 3.8
Identities = 18/71 (25%), Positives = 23/71 (32%)
Frame = +3
Query: 603 PRXXPRXAPXXPXPXPXAPTXXPMXPPRPAHXLXXGXKSQXXRPPXXRXPPXPXPXXXXX 782
P P P P P AP P+ PA S RPP + P
Sbjct: 231 PEANPAPVPTATKPSPFAPAIAPLRDGAPAQPPAPIQASAPLRPPVAKQNSLQKPPEPKR 290
Query: 783 AXASXPPETTP 815
+ + PP+ P
Sbjct: 291 SVGA-PPKALP 300
>Z93393-1|CAB07688.1| 497|Caenorhabditis elegans Hypothetical
protein Y48E1B.1 protein.
Length = 497
Score = 29.1 bits (62), Expect = 5.1
Identities = 14/47 (29%), Positives = 17/47 (36%)
Frame = +3
Query: 732 PPXXRXPPXPXPXXXXXAXASXPPETTPXXRXGPXYTPXXPPR*RTP 872
PP + P P P PP +P P P PP +TP
Sbjct: 327 PPPMKLDPSPQPAATPVEITEIPPIISPPAPPPPPPPPPPPPPPQTP 373
>Z83219-3|CAD57687.1| 965|Caenorhabditis elegans Hypothetical
protein C31C9.6 protein.
Length = 965
Score = 28.7 bits (61), Expect = 6.7
Identities = 25/106 (23%), Positives = 28/106 (26%), Gaps = 1/106 (0%)
Frame = +3
Query: 642 PXPXAPTXXPMXPPRPAHXLXXGXKSQXXRPPXXRXPPXPXPXXXXXAXAS-XPPETTPX 818
P AP P PP + G PP P P P S P E +
Sbjct: 429 PTRVAPPPPPSAPPTIKFPISTGTSYSSTTPPTTPKPAPPPPSRIPNPSPSPQPAEVSKS 488
Query: 819 XRXGPXYTPXXPPR*RTPXXXPTXXXXXXXPXXPXLPGXAVPAHKS 956
P P P P P P + AVP S
Sbjct: 489 PPPPPPLPPIATPSSVPPPPPPPPALEQEISGPPTVRLTAVPESNS 534
>Z78013-1|CAB01425.3| 1140|Caenorhabditis elegans Hypothetical
protein F15B9.4 protein.
Length = 1140
Score = 28.7 bits (61), Expect = 6.7
Identities = 27/93 (29%), Positives = 30/93 (32%), Gaps = 7/93 (7%)
Frame = +3
Query: 588 PTXXLPRXXP--RXAPXXPXPXPX--APTXXPMXPPRPAHXL---XXGXKSQXXRPPXXR 746
P +P P AP P P P A P PP P L G KS PP
Sbjct: 521 PPPPMPGMAPLSTGAPTPPPPPPVGMANGGPPPPPPLPLDLLKGAVAGLKSVPGGPP--- 577
Query: 747 XPPXPXPXXXXXAXASXPPETTPXXRXGPXYTP 845
PP P P P +P P +P
Sbjct: 578 -PPPPPPPPSFMFNGKVPNAFSPGTSTSPVLSP 609
>U10438-9|AAU87834.1| 616|Caenorhabditis elegans Hypothetical
protein B0280.13 protein.
Length = 616
Score = 28.7 bits (61), Expect = 6.7
Identities = 28/118 (23%), Positives = 34/118 (28%)
Frame = +3
Query: 603 PRXXPRXAPXXPXPXPXAPTXXPMXPPRPAHXLXXGXKSQXXRPPXXRXPPXPXPXXXXX 782
P+ R AP P P PT P++ + PP P P P
Sbjct: 433 PKTPTRVAP--PPPPSAPPTIKFPISTGPSYSSTTPPTTPKPAPPPPSRIPNPSPSPQPA 490
Query: 783 AXASXPPETTPXXRXGPXYTPXXPPR*RTPXXXPTXXXXXXXPXXPXLPGXAVPAHKS 956
+ PP P P TP P P P P + AVP S
Sbjct: 491 EVSKSPPPPPPLP---PIATPSSVPPPPPPPPPPPPALEQEISGPPTVRLTAVPESNS 545
>U41543-12|AAZ91345.1| 401|Caenorhabditis elegans Groundhog
(hedgehog-like family)protein 7 protein.
Length = 401
Score = 28.3 bits (60), Expect = 8.8
Identities = 19/58 (32%), Positives = 22/58 (37%), Gaps = 3/58 (5%)
Frame = +3
Query: 636 PXPXPXAPTXXPM---XPPRPAHXLXXGXKSQXXRPPXXRXPPXPXPXXXXXAXASXP 800
P P A T P PP+PA + + Q PP PP P P A A P
Sbjct: 15 PESAPAATTPQPPPPPPPPKPAPYVEQSAQPQQTAPP---PPPAPYPQQAVPAPAPPP 69
Score = 28.3 bits (60), Expect = 8.8
Identities = 26/105 (24%), Positives = 31/105 (29%), Gaps = 4/105 (3%)
Frame = +3
Query: 582 PGPTXXLPRXXPRXAPXXPXPXPXAPTXXPMXPPRPAHXLXXGXKSQXXRP----PXXRX 749
P P +P P P P P P P P + + P P
Sbjct: 56 PYPQQAVPAPAP---PPAPYPQHAVPAPAPPLASYPQNAVPVPAPPPAPYPQHAVPAPAP 112
Query: 750 PPXPXPXXXXXAXASXPPETTPXXRXGPXYTPXXPPR*RTPXXXP 884
PP P P A A P + P P + P PP P P
Sbjct: 113 PPAPYPQHAVPAPA--PYQQQPPPPPPPPHYPPPPPHYPPPPPAP 155
>U41017-1|AAC48211.1| 343|Caenorhabditis elegans Hypothetical
protein T26C11.2 protein.
Length = 343
Score = 28.3 bits (60), Expect = 8.8
Identities = 21/88 (23%), Positives = 25/88 (28%), Gaps = 2/88 (2%)
Frame = +3
Query: 600 LPRXXPRXAPXX-PXPXPXA-PTXXPMXPPRPAHXLXXGXKSQXXRPPXXRXPPXPXPXX 773
+P+ P+ P P P P P P P P H K P P P P
Sbjct: 157 MPKSKPKSEPFPNPMPFPKPMPKPKPKPKPMPKHKPKPFPKPMLFPKPMPIPKPMPFPKP 216
Query: 774 XXXAXASXPPETTPXXRXGPXYTPXXPP 857
P+ P P P P
Sbjct: 217 MPKPMPKHKPKPFPKPMLFPKPMPIPKP 244
>M80650-1|AAA27985.1| 298|Caenorhabditis elegans alpha-collagen
protein.
Length = 298
Score = 28.3 bits (60), Expect = 8.8
Identities = 25/98 (25%), Positives = 27/98 (27%), Gaps = 2/98 (2%)
Frame = +3
Query: 642 PXPXAPTXXPMXPPRPAHXLXXGXKSQXXRPPXXRXPP-XPXPXXXXXAXASXPP-ETTP 815
P P P P P RP G RPP P P P PP P
Sbjct: 102 PGPPGPAGTPGKPGRPGKPGAPGLPGNPGRPPQQPCEPITPPPWKPCPQGPPGPPGPPGP 161
Query: 816 XXRXGPXYTPXXPPR*RTPXXXPTXXXXXXXPXXPXLP 929
G +P P + P P P P P
Sbjct: 162 PGDSGEPGSPGLPGQDAAP-GEPGPKGPKGPPGAPGAP 198
>AF000193-3|AAB52890.1| 259|Caenorhabditis elegans Hypothetical
protein T20B6.3 protein.
Length = 259
Score = 28.3 bits (60), Expect = 8.8
Identities = 29/116 (25%), Positives = 33/116 (28%)
Frame = -1
Query: 928 GSXGXXGWXXXXXXVGXWXGVL*RGGXXGVYXGPXRXXGVVSGGXEAXAXXSXXGXGXGG 749
G G G +G + G GG G Y G G GG + G G G
Sbjct: 135 GGYGGMGGGPGGYGMGGYGGGGGGGGDFGGYGGGGMGGGGYGGGGDGGYGGGGFGGGGMG 194
Query: 748 XLXXGGRXXWLFXPXXXXCAGRGGXMGXXVGAXGXGXGXXGAXRGXXRGRXXVGPG 581
GG + G GG G G G G G G G G
Sbjct: 195 G-YGGGMGGGGYGGGGMGGGGYGGGGDGGYGPSGGYGGGYGPGGGYGMGGGGGGGG 249
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,893,580
Number of Sequences: 27780
Number of extensions: 129675
Number of successful extensions: 912
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 421
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 741
length of database: 12,740,198
effective HSP length: 82
effective length of database: 10,462,238
effective search space used: 2552786072
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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