Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP11_F_H09
         (939 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_02_0115 - 11248021-11248101,11249017-11249118                       56   5e-08
05_03_0661 - 16726958-16726966,16727133-16727234                       54   1e-07
02_01_0681 - 5059082-5059217,5059318-5059783,5059869-5060072,506...    29   7.1  

>01_02_0115 - 11248021-11248101,11249017-11249118
          Length = 60

 Score = 55.6 bits (128), Expect = 5e-08
 Identities = 26/59 (44%), Positives = 37/59 (62%)
 Frame = +2

Query: 95  MAKSKNHTNHNQNRKAHRNGIKKPRKTRHESTLVHGSKIFKESKVLQEG*PEASQATRE 271
           MAKSKNHT HNQ+ KAH+NGIKKP++ R  ST     K  +  +  ++   ++ +A  E
Sbjct: 1   MAKSKNHTAHNQSYKAHKNGIKKPKRHRQTSTKGMDPKFLRNQRYSRKHNKKSGEAESE 59


>05_03_0661 - 16726958-16726966,16727133-16727234
          Length = 36

 Score = 54.4 bits (125), Expect = 1e-07
 Identities = 23/32 (71%), Positives = 27/32 (84%)
 Frame = +2

Query: 95  MAKSKNHTNHNQNRKAHRNGIKKPRKTRHEST 190
           MAKSKNHT HNQ+ KAH+NGIKKP++ R  ST
Sbjct: 1   MAKSKNHTAHNQSYKAHKNGIKKPKRHRQTST 32


>02_01_0681 -
           5059082-5059217,5059318-5059783,5059869-5060072,
           5060163-5060315,5060849-5061269
          Length = 459

 Score = 28.7 bits (61), Expect = 7.1
 Identities = 13/27 (48%), Positives = 20/27 (74%), Gaps = 1/27 (3%)
 Frame = -3

Query: 103 LCHFDAFSIHLDSEDRTRTK-ILRNSL 26
           +CH++  SI  + EDRT+TK I++ SL
Sbjct: 255 ICHYNVHSIDNELEDRTQTKPIVQTSL 281


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,717,444
Number of Sequences: 37544
Number of extensions: 196146
Number of successful extensions: 498
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 489
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 497
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2694390200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)