Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP11_F_H08
         (962 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Y12490-1|CAA73095.1| 1979|Homo sapiens Golgi-associated microtub...    31   8.3  
BX641024-1|CAE46015.1| 1694|Homo sapiens hypothetical protein pr...    31   8.3  
AF007217-1|AAD09135.1| 1978|Homo sapiens Trip230 protein.              31   8.3  

>Y12490-1|CAA73095.1| 1979|Homo sapiens Golgi-associated
            microtubule-binding protein protein.
          Length = 1979

 Score = 30.7 bits (66), Expect = 8.3
 Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 2/69 (2%)
 Frame = +3

Query: 234  VRKQDKTVEDDDTLKK--LNKLVLDEKNVIDSRTQMEIRNVELAFKILLGSISNKYLQKT 407
            ++   K +ED +  K   L  L   +K + + R Q E  N       L      K LQKT
Sbjct: 912  IKHHQKIIEDQNQSKMQLLQSLQEQKKEMDEFRYQHEQMNATHTQLFLEKDEEIKSLQKT 971

Query: 408  VGELKTELH 434
            + ++KT+LH
Sbjct: 972  IEQIKTQLH 980


>BX641024-1|CAE46015.1| 1694|Homo sapiens hypothetical protein
           protein.
          Length = 1694

 Score = 30.7 bits (66), Expect = 8.3
 Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 2/69 (2%)
 Frame = +3

Query: 234 VRKQDKTVEDDDTLKK--LNKLVLDEKNVIDSRTQMEIRNVELAFKILLGSISNKYLQKT 407
           ++   K +ED +  K   L  L   +K + + R Q E  N       L      K LQKT
Sbjct: 627 IKHHQKIIEDQNQSKMQLLQSLQEQKKEMDEFRYQHEQMNATHTQLFLEKDEEIKSLQKT 686

Query: 408 VGELKTELH 434
           + ++KT+LH
Sbjct: 687 IEQIKTQLH 695


>AF007217-1|AAD09135.1| 1978|Homo sapiens Trip230 protein.
          Length = 1978

 Score = 30.7 bits (66), Expect = 8.3
 Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 2/69 (2%)
 Frame = +3

Query: 234  VRKQDKTVEDDDTLKK--LNKLVLDEKNVIDSRTQMEIRNVELAFKILLGSISNKYLQKT 407
            ++   K +ED +  K   L  L   +K + + R Q E  N       L      K LQKT
Sbjct: 912  IKHHQKIIEDQNQSKMQLLQSLQEQKKEMDEFRYQHEQMNATHTQLFLEKDEEIKSLQKT 971

Query: 408  VGELKTELH 434
            + ++KT+LH
Sbjct: 972  IEQIKTQLH 980


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 83,270,168
Number of Sequences: 237096
Number of extensions: 1554634
Number of successful extensions: 2412
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2281
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2412
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 12769697060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)