Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP11_F_H07
(891 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC4C3.12 |sep1||fork head transcription factor Sep1|Schizosacc... 75 2e-14
SPBC16G5.15c |fkh2||fork head transcription factor Fkh2 |Schizos... 70 5e-13
SPBC32H8.11 |mei4||meiotic forkhead transcription factor Mei4 |S... 67 4e-12
SPAC1142.08 |fhl1|SPAC8C9.01|fork head transcription factor Fhl1... 60 4e-10
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|... 29 0.89
SPCC737.04 |||S. pombe specific UPF0300 family protein 6|Schizos... 28 1.6
SPAC2F3.01 ||SPAC323.09|mannosyltransferase complex subunit |Sch... 28 2.1
SPBC1683.02 |||adenine deaminase |Schizosaccharomyces pombe|chr ... 27 4.7
SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase Abc... 26 6.3
SPBC1271.12 |kes1||oxysterol binding protein |Schizosaccharomyce... 26 6.3
SPBC725.16 |res1|sct1|MBF transcription factor complex subunit R... 26 8.3
SPCC1884.02 |nic1|SPCC757.01|NiCoT heavy metal ion transporter N... 26 8.3
>SPBC4C3.12 |sep1||fork head transcription factor
Sep1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 663
Score = 74.5 bits (175), Expect = 2e-14
Identities = 35/89 (39%), Positives = 53/89 (59%)
Frame = +2
Query: 554 KPAYSYASMIRLAISSSPNGKMTLNEIYTYICNAFPYYKEAGKGWMNSIRHNLSLTNVL* 733
KP YSYA +I ++I SP+ ++TL+ IY +I N F +Y ++ GW NSIRHNLSL
Sbjct: 128 KPPYSYAMLIGMSIIRSPDRRLTLSAIYDWISNTFSFYNKSNNGWQNSIRHNLSLNKAFM 187
Query: 734 KLLGVKMIQGRVHIGRWILITKWQKSLLK 820
K+ + + G+ H W + ++ LK
Sbjct: 188 KIERPRNLPGKGHF--WSIRPGHEEQFLK 214
Score = 33.1 bits (72), Expect = 0.055
Identities = 13/37 (35%), Positives = 23/37 (62%)
Frame = +1
Query: 718 NKCFMKVARSKDDPGKGSYWAMDTNYKMAEVPPKKRR 828
NK FMK+ R ++ PGKG +W++ ++ + K R+
Sbjct: 183 NKAFMKIERPRNLPGKGHFWSIRPGHEEQFLKLKLRK 219
>SPBC16G5.15c |fkh2||fork head transcription factor Fkh2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 642
Score = 69.7 bits (163), Expect = 5e-13
Identities = 35/88 (39%), Positives = 51/88 (57%)
Frame = +2
Query: 554 KPAYSYASMIRLAISSSPNGKMTLNEIYTYICNAFPYYKEAGKGWMNSIRHNLSLTNVL* 733
KP YSY+ MI AI SS MTL+ IY++I +PYY+ GW NSIRHNLSL
Sbjct: 223 KPPYSYSVMIAQAILSSSECMMTLSNIYSWISTHYPYYRTTKSGWQNSIRHNLSLNKAFR 282
Query: 734 KLLGVKMIQGRVHIGRWILITKWQKSLL 817
K+ QG+ +W ++ ++++ +
Sbjct: 283 KVPRKSGEQGKGM--KWSIVPEFREEFI 308
>SPBC32H8.11 |mei4||meiotic forkhead transcription factor Mei4
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 517
Score = 66.9 bits (156), Expect = 4e-12
Identities = 33/62 (53%), Positives = 40/62 (64%)
Frame = +2
Query: 554 KPAYSYASMIRLAISSSPNGKMTLNEIYTYICNAFPYYKEAGKGWMNSIRHNLSLTNVL* 733
KP SYA++I LAI S N ++TL+ IYT+I N F YY GW NSIRHNLSL
Sbjct: 81 KPPCSYATLIGLAILQSHNKQLTLSGIYTWIRNTFRYYLNHDGGWQNSIRHNLSLNKAFI 140
Query: 734 KL 739
K+
Sbjct: 141 KV 142
Score = 29.1 bits (62), Expect = 0.89
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +1
Query: 718 NKCFMKVARSKDDPGKGSYWAMDTNY 795
NK F+KV + K KG YW +D ++
Sbjct: 136 NKAFIKVEKPKGKTLKGHYWTIDPDH 161
>SPAC1142.08 |fhl1|SPAC8C9.01|fork head transcription factor Fhl1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 743
Score = 60.1 bits (139), Expect = 4e-10
Identities = 27/55 (49%), Positives = 36/55 (65%)
Frame = +2
Query: 554 KPAYSYASMIRLAISSSPNGKMTLNEIYTYICNAFPYYKEAGKGWMNSIRHNLSL 718
KP SYA++I + ++PN KMTL +I +I N + YY+ W NSIRHNLSL
Sbjct: 291 KPNLSYANLIARTLIANPNKKMTLGDICEWIANNWSYYRHQPPAWHNSIRHNLSL 345
Score = 38.7 bits (86), Expect = 0.001
Identities = 12/26 (46%), Positives = 21/26 (80%)
Frame = +1
Query: 718 NKCFMKVARSKDDPGKGSYWAMDTNY 795
NK F+++ R +++PGKGS+W +D +Y
Sbjct: 346 NKAFIRIPRRQNEPGKGSFWMLDPSY 371
>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1752
Score = 29.1 bits (62), Expect = 0.89
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = +2
Query: 386 SPGVEWLPAYSPGTPRHSPLGP 451
SPG PAY P +P +SP P
Sbjct: 1562 SPGYSTSPAYMPSSPSYSPTSP 1583
>SPCC737.04 |||S. pombe specific UPF0300 family protein
6|Schizosaccharomyces pombe|chr 3|||Manual
Length = 421
Score = 28.3 bits (60), Expect = 1.6
Identities = 10/27 (37%), Positives = 18/27 (66%)
Frame = +2
Query: 686 WMNSIRHNLSLTNVL*KLLGVKMIQGR 766
W++ + NLS+ N+ K LG+ ++ GR
Sbjct: 68 WLSKLDRNLSIENLTGKSLGIVVVSGR 94
>SPAC2F3.01 ||SPAC323.09|mannosyltransferase complex subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 319
Score = 27.9 bits (59), Expect = 2.1
Identities = 12/44 (27%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Frame = -1
Query: 837 SLXPTFFRRDFCHFVISIHRPI*TLPWIIF--TPSNFHKTFVXD 712
S P F FC ++++ H P+ LP +++ P++F D
Sbjct: 216 SAGPLFLSYQFCKYLLTPHEPVRVLPALLYGNGPNSFFSHVTGD 259
>SPBC1683.02 |||adenine deaminase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 339
Score = 26.6 bits (56), Expect = 4.7
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = -3
Query: 412 RGQPLHSRRLAHCPINITNLTPHIRLIITSIG 317
R + L R HC ++ N T HIR + IG
Sbjct: 186 RARQLGYRLTCHCDLHQKNTTTHIRQALEDIG 217
>SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase
Abc2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1463
Score = 26.2 bits (55), Expect = 6.3
Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Frame = +1
Query: 157 VPIYFLILFCLIYWSYKSDVLVNLDRS*FQGLFMYYNKSL--REKQRGYDPEG-FVS 318
VP++FL + +Y++ S L LD L+ ++ +SL R YD E F+S
Sbjct: 1049 VPLFFLYRYNQVYYTQTSRELKRLDSVTRSPLYAHFQESLGGLSTIRAYDMEDTFIS 1105
>SPBC1271.12 |kes1||oxysterol binding protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 388
Score = 26.2 bits (55), Expect = 6.3
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +2
Query: 740 LGVKMIQGRVHIGRWILITKWQKSLLKN 823
L + + +G + R +L+TKW S LKN
Sbjct: 69 LFISLPRGETPLERQLLVTKWFASTLKN 96
>SPBC725.16 |res1|sct1|MBF transcription factor complex subunit
Res1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 637
Score = 25.8 bits (54), Expect = 8.3
Identities = 8/23 (34%), Positives = 12/23 (52%)
Frame = +2
Query: 629 EIYTYICNAFPYYKEAGKGWMNS 697
E++ Y N FP K W+N+
Sbjct: 15 EVFEYTINGFPLMKRCHDNWLNA 37
>SPCC1884.02 |nic1|SPCC757.01|NiCoT heavy metal ion transporter
Nic1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 405
Score = 25.8 bits (54), Expect = 8.3
Identities = 13/43 (30%), Positives = 24/43 (55%)
Frame = +1
Query: 151 VNVPIYFLILFCLIYWSYKSDVLVNLDRS*FQGLFMYYNKSLR 279
V+VPI+ LI ++ W + V+ ++RS F + + + LR
Sbjct: 33 VSVPIFSLISVNIVVWIVAAIVISLVNRSLFLSVLLSWTLGLR 75
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,257,827
Number of Sequences: 5004
Number of extensions: 62959
Number of successful extensions: 176
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 175
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 448490560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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