Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP11_F_H07
         (891 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_01_0346 - 4536487-4536543,4536714-4536738,4537012-4537285,453...    36   0.057
04_01_0349 - 4570071-4571267                                           31   0.93 
06_01_1047 + 8249815-8250291                                           31   1.6  
04_01_0533 - 6956275-6956372,6957106-6957232                           29   3.8  
11_06_0025 - 19341127-19341339,19341426-19341620,19341912-193420...    29   6.6  
05_07_0334 - 29358823-29360247                                         29   6.6  
02_04_0465 - 23146332-23146367,23146786-23146858,23147200-231472...    28   8.7  

>04_01_0346 -
           4536487-4536543,4536714-4536738,4537012-4537285,
           4538206-4538236,4539101-4539176,4539244-4539308,
           4539766-4539848,4540489-4541519,4543209-4543507
          Length = 646

 Score = 35.5 bits (78), Expect = 0.057
 Identities = 23/52 (44%), Positives = 29/52 (55%), Gaps = 5/52 (9%)
 Frame = +3

Query: 348 GVRLVIFMGQ*ASRR---EWS-GCPRTVLELLATA-PSDRYRASFTRMCSHW 488
           G+ L + M   A RR   +WS G PR +LE +A   PS R  ASF  +CS W
Sbjct: 104 GIILFLSMAAPAERRSEPDWSSGLPRKLLEFIAKKLPSGRDAASFRLVCSPW 155


>04_01_0349 - 4570071-4571267
          Length = 398

 Score = 31.5 bits (68), Expect = 0.93
 Identities = 16/34 (47%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
 Frame = +3

Query: 393 EWS-GCPRTVLELLATA-PSDRYRASFTRMCSHW 488
           +WS G PR +LE++A   PS    ASF  +CS W
Sbjct: 9   DWSSGLPRELLEIIAKKLPSGHDAASFRSVCSPW 42


>06_01_1047 + 8249815-8250291
          Length = 158

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 18/66 (27%), Positives = 24/66 (36%)
 Frame = +1

Query: 400 VAARVQSWNSSPQPPRTDTALPLRGCAATGFATGKQQQGRTEGEH*QN*TCETSLQLCKH 579
           V  RV        PP      P    AA  +    Q QGRT     Q   C   L+  +H
Sbjct: 46  VGGRVVMLRVVEAPPGQQRVAPAAAKAALPYFPYAQAQGRTSSSETQTLVCAVCLEELRH 105

Query: 580 DKACNQ 597
            + C++
Sbjct: 106 GELCSE 111


>04_01_0533 - 6956275-6956372,6957106-6957232
          Length = 74

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = -1

Query: 465 RKRGIGPRGLWRGVPGLYAG 406
           R+  +GPRGLWR  P L  G
Sbjct: 25  RELAVGPRGLWRASPELVVG 44


>11_06_0025 -
           19341127-19341339,19341426-19341620,19341912-19342088,
           19342505-19342672,19343533-19343574,19344129-19344214,
           19345218-19345545
          Length = 402

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 13/33 (39%), Positives = 15/33 (45%)
 Frame = +1

Query: 388 AGSGVAARVQSWNSSPQPPRTDTALPLRGCAAT 486
           A + VA     W  SP PPRT +A     C  T
Sbjct: 58  AAAPVAPTAAPWPPSPPPPRTPSAASTSSCRPT 90


>05_07_0334 - 29358823-29360247
          Length = 474

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 20/56 (35%), Positives = 26/56 (46%), Gaps = 4/56 (7%)
 Frame = +1

Query: 355 D*LYLWDNERVAGSGVAARVQSWNSSPQP----PRTDTALPLRGCAATGFATGKQQ 510
           D LYLW   R AG G A +V++     Q      R D ++ + G    G A  KQQ
Sbjct: 350 DLLYLWRKYRRAGEGTAEKVEARERLVQEMGRRSRVDRSVEMIGGLLLGGAKHKQQ 405


>02_04_0465 -
           23146332-23146367,23146786-23146858,23147200-23147267,
           23147588-23147675,23147845-23147932,23148439-23148535,
           23148645-23148752,23148916-23149032,23149132-23149260
          Length = 267

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 4/52 (7%)
 Frame = +1

Query: 382 RVAGSGVAARVQSWNSSPQPPR-TDTALPLR---GCAATGFATGKQQQGRTE 525
           RV+G+G A    +W+SS +  R     LP +   G    G A G +Q+G  E
Sbjct: 13  RVSGAGAATPAAAWSSSCRSRRLRPRLLPSKRWSGVVRMGAAVGGEQEGEDE 64


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,142,466
Number of Sequences: 37544
Number of extensions: 417771
Number of successful extensions: 1159
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1084
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1155
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2506954360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)