Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP11_F_H07
         (891 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       65   9e-13
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    24   2.1  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    24   2.1  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   6.5  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 64.9 bits (151), Expect = 9e-13
 Identities = 28/66 (42%), Positives = 43/66 (65%)
 Frame = +2

Query: 554 KPAYSYASMIRLAISSSPNGKMTLNEIYTYICNAFPYYKEAGKGWMNSIRHNLSLTNVL* 733
           +P ++YAS+IR +I  SP+ ++TLNEIY +  N F Y++     W N++RHNLSL     
Sbjct: 504 RPPFTYASLIRQSIIESPDKQLTLNEIYNWFQNTFCYFRRNAATWKNAVRHNLSLHKCFM 563

Query: 734 KLLGVK 751
           ++  VK
Sbjct: 564 RVENVK 569


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +3

Query: 396 WSGCPRTVLELLATAPSDRYRASFTRMCSHWL 491
           WSGC + ++ +L   PS+ + A      S WL
Sbjct: 292 WSGCLQFLVPMLQGFPSNSWVAINELQDSFWL 323


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +3

Query: 396 WSGCPRTVLELLATAPSDRYRASFTRMCSHWL 491
           WSGC + ++ +L   PS+ + A      S WL
Sbjct: 260 WSGCLQFLVPMLQGFPSNSWVAINELQDSFWL 291


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 12/35 (34%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
 Frame = -3

Query: 400  LHSRR--LAHCPINITNLTPHIRLIITSIGSQSPQ 302
            LHS +  +A    N+TN+T ++  I+  +  QS Q
Sbjct: 942  LHSAQSVVASSASNVTNVTTNLTTILPPVKVQSQQ 976


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 226,845
Number of Sequences: 438
Number of extensions: 5331
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 28783482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)