Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP11_F_H04
         (907 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4G8.12c |||alpha-1,2-mannosyltransferase |Schizosaccharomyce...    30   0.52 
SPBC1D7.03 |mug80||cyclin Clg1 |Schizosaccharomyces pombe|chr 2|...    28   1.6  
SPAC25G10.04c |rec10|rec20|meiotic recombination protein Rec10 |...    28   2.1  

>SPAC4G8.12c |||alpha-1,2-mannosyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 533

 Score = 29.9 bits (64), Expect = 0.52
 Identities = 17/52 (32%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
 Frame = -1

Query: 721 SLKIDLT*GLWDSTPLVPKWTVCTLLSATLLEGTFSSD--VDNVVTRNFFLS 572
           SL IDL+  +W+  PL  +W+   L S++ +  TF +    +++ T  FFL+
Sbjct: 103 SLLIDLS--IWNIVPLNARWSALLLYSSSFMATTFQTHTFTNSIETIFFFLT 152


>SPBC1D7.03 |mug80||cyclin Clg1 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 461

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 15/34 (44%), Positives = 20/34 (58%)
 Frame = +3

Query: 549 NENQTIVGERKKFLVTTLSTSDEKVPSSSVAESN 650
           + N T  GE+K +  TTLST+    PSS  + SN
Sbjct: 406 SSNATYSGEQKTYSPTTLSTNAPPSPSSGRSCSN 439


>SPAC25G10.04c |rec10|rec20|meiotic recombination protein Rec10
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 791

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +1

Query: 481 SLQPNMEKQNTKIRRRKIKSNHQMKIKP 564
           SL+P+ E Q + ++ +K KSN  ++  P
Sbjct: 503 SLKPDTENQESSVKNKKAKSNVNLQYSP 530


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,733,715
Number of Sequences: 5004
Number of extensions: 80133
Number of successful extensions: 208
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 197
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 208
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 458501510
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)