Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP11_F_H03
(905 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z22176-6|CAA80139.1| 133|Caenorhabditis elegans Hypothetical pr... 79 6e-15
Z35719-3|CAA84797.1| 347|Caenorhabditis elegans Hypothetical pr... 31 1.5
AF067945-1|AAC17679.1| 312|Caenorhabditis elegans Serpentine re... 31 1.5
Z68317-5|CAA92689.2| 165|Caenorhabditis elegans Hypothetical pr... 29 4.6
AF188751-1|AAF00548.1| 1083|Caenorhabditis elegans tyrosine kina... 29 4.6
AF078787-11|AAC26948.2| 1083|Caenorhabditis elegans Vegf (vascul... 29 4.6
U23179-4|AAK68209.1| 341|Caenorhabditis elegans Serpentine rece... 29 6.0
AF100306-10|AAC68926.1| 798|Caenorhabditis elegans Hypothetical... 29 6.0
U40419-5|AAA81426.1| 165|Caenorhabditis elegans Hypothetical pr... 28 8.0
>Z22176-6|CAA80139.1| 133|Caenorhabditis elegans Hypothetical
protein ZK1098.7 protein.
Length = 133
Score = 78.6 bits (185), Expect = 6e-15
Identities = 42/115 (36%), Positives = 68/115 (59%), Gaps = 3/115 (2%)
Frame = +1
Query: 172 SRLERIGTIFTRVEGLLSRGAMKPDDRPLWFDVYKAFPPITEPKY-ARPNLVVKEIRPIL 348
+R ER G IF+RV GL+ G + DRPLW+DVY + PP+T P + + + IR I
Sbjct: 6 TRAERSGNIFSRVTGLIRAGQLNWADRPLWYDVYVSSPPLTPPDWNVKLAKYDEPIRSIF 65
Query: 349 YKEDVLRAKFHSNGYGLAPVSLLNQSNETQTKRLVQQYDELKAEG--IPEDEIIE 507
Y+EDVLRAKF+ A + ++ S + +++ + +Y +K+E +D++ E
Sbjct: 66 YEEDVLRAKFYKTYRSTAGIQ-VDSSRTSVSQQFINEYKLVKSENAEATDDQLFE 119
>Z35719-3|CAA84797.1| 347|Caenorhabditis elegans Hypothetical
protein F17C8.5 protein.
Length = 347
Score = 30.7 bits (66), Expect = 1.5
Identities = 24/68 (35%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Frame = -3
Query: 669 VLIL*SSTLFV-VENIFYISFSQYLGCNGIRIFRCNI-QFLCSIAVAFDGYCLCGFLNDF 496
+ +L SS LF +ENI Y+S S Y G I +F I + + V F GYC+ ++D
Sbjct: 213 ISLLSSSALFSSIENISYLS-SVYFGI--ITMFLIGIGDIVPTNLVWFSGYCMLFLISDV 269
Query: 495 IFRNAFCF 472
+ F F
Sbjct: 270 LSNQIFYF 277
>AF067945-1|AAC17679.1| 312|Caenorhabditis elegans Serpentine
receptor, class g (gamma)protein 31 protein.
Length = 312
Score = 30.7 bits (66), Expect = 1.5
Identities = 28/93 (30%), Positives = 41/93 (44%), Gaps = 2/93 (2%)
Frame = -3
Query: 360 VFLV*DWSYFFDY--KIRTCIFRFGDWRESFVYIKPQGSVIRFHCSSAKKTFNSGKYCTN 187
VFL +W +F +Y K+ C F F W YI R S+ K + SG + +
Sbjct: 25 VFLTKNWKHFDNYFLKLYICQFFFNMWMYWNFYI-----TSRLPASTCKDCYLSGWFDSL 79
Query: 186 SFQSATGHVKKFFLKLLARLIYVSLMQTNNLFL 88
S S + KFF+ ++ M +NLFL
Sbjct: 80 SKDSGSMFPFKFFIFC---QYHLGFMSYSNLFL 109
>Z68317-5|CAA92689.2| 165|Caenorhabditis elegans Hypothetical
protein T01H3.5 protein.
Length = 165
Score = 29.1 bits (62), Expect = 4.6
Identities = 21/95 (22%), Positives = 43/95 (45%)
Frame = +1
Query: 349 YKEDVLRAKFHSNGYGLAPVSLLNQSNETQTKRLVQQYDELKAEGIPEDEIIEKAAQAVA 528
+K DVLR F YG++ + +LN+ ++ +L + + + I E+ EK +
Sbjct: 3 WKNDVLR--FSGFDYGVSKIRMLNEELHSECDQLSKSNESTSLKDITEEPKDEKLESIIE 60
Query: 529 VERHSYAAQKLNVTPKNPDSVTAQVLAEADIKNIF 633
++ + ++ N N A + E I+N +
Sbjct: 61 TAKNKESEKEENSHVFNDCEFDA--MTERKIENFY 93
>AF188751-1|AAF00548.1| 1083|Caenorhabditis elegans tyrosine kinase
receptor T17A3.1 protein.
Length = 1083
Score = 29.1 bits (62), Expect = 4.6
Identities = 31/108 (28%), Positives = 50/108 (46%), Gaps = 1/108 (0%)
Frame = +1
Query: 250 RPLWFDVYKAFPPITEPKYARPNLVVKEIRPILYKEDVLRAKFHSNGYGL-APVSLLNQS 426
R +W KA I + P + ++R + L+AK S L A ++
Sbjct: 329 RCIWKKTGKARQEIEHSLHVSPTIA--QVRILEQSPSFLKAKAGSGSVKLYAKFAVYPAG 386
Query: 427 NETQTKRLVQQYDELKAEGIPEDEIIEKAAQAVAVERHSYAAQKLNVT 570
N T T R + Y+ + EG P DEI+EK A +E +S + + L++T
Sbjct: 387 NYTVTWR--RTYNSI--EG-PRDEIVEKGLSATFLE-NSESMEVLDIT 428
>AF078787-11|AAC26948.2| 1083|Caenorhabditis elegans Vegf (vascular
endothelial growthfactor) receptor family protein 1
protein.
Length = 1083
Score = 29.1 bits (62), Expect = 4.6
Identities = 31/108 (28%), Positives = 50/108 (46%), Gaps = 1/108 (0%)
Frame = +1
Query: 250 RPLWFDVYKAFPPITEPKYARPNLVVKEIRPILYKEDVLRAKFHSNGYGL-APVSLLNQS 426
R +W KA I + P + ++R + L+AK S L A ++
Sbjct: 329 RCIWKKTGKARQEIEHSLHVSPTIA--QVRILEQSPSFLKAKAGSGSVKLYAKFAVYPAG 386
Query: 427 NETQTKRLVQQYDELKAEGIPEDEIIEKAAQAVAVERHSYAAQKLNVT 570
N T T R + Y+ + EG P DEI+EK A +E +S + + L++T
Sbjct: 387 NYTVTWR--RTYNSI--EG-PRDEIVEKGLSATFLE-NSESMEVLDIT 428
>U23179-4|AAK68209.1| 341|Caenorhabditis elegans Serpentine
receptor, class b (beta)protein 3 protein.
Length = 341
Score = 28.7 bits (61), Expect = 6.0
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = -3
Query: 642 FVVENIFYISFSQYLGCNGIRIFRCNIQFLCSIAVAF 532
F+ IF++ F L C I F CN+ F ++ AF
Sbjct: 42 FITRKIFFLHFHGNLKCLLIVYFICNLLFSMALCFAF 78
>AF100306-10|AAC68926.1| 798|Caenorhabditis elegans Hypothetical
protein T24C4.7 protein.
Length = 798
Score = 28.7 bits (61), Expect = 6.0
Identities = 14/55 (25%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Frame = +1
Query: 421 QSNETQTKRLVQQYDELKAEGIPEDEIIEKAAQAVAVE-RHSYAAQKLNVTPKNP 582
+ E + ++ + + EG+ E+EI+E + A++ E YA K + P P
Sbjct: 694 EEEEEEPNQIPMASEHIDIEGVDEEEIMEHSVNAISEEILFEYADDKRDDGPSTP 748
>U40419-5|AAA81426.1| 165|Caenorhabditis elegans Hypothetical
protein C27F2.6 protein.
Length = 165
Score = 28.3 bits (60), Expect = 8.0
Identities = 24/68 (35%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Frame = -3
Query: 669 VLIL*SSTLFV-VENIFYISFSQYLGCNGIRIFRCNI-QFLCSIAVAFDGYCLCGFLNDF 496
+ +L SS LF +ENI Y S S Y G + IF + + + V F GYCL ++D
Sbjct: 31 ISLLSSSALFSSIENISYQS-SAYFGF--MTIFGISFGDIVPTNLVWFSGYCLFFLISDV 87
Query: 495 IFRNAFCF 472
+ + F F
Sbjct: 88 LSNHIFYF 95
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,093,559
Number of Sequences: 27780
Number of extensions: 309456
Number of successful extensions: 837
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 805
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 836
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2307803960
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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