Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP11_F_H01
         (917 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|c...    27   3.7  
SPAP27G11.12 |||human down-regulated in multiple cancers-1 homol...    27   4.9  
SPAC1851.03 |ckb1||CK2 family regulatory subunit |Schizosaccharo...    27   4.9  
SPBC428.20c |alp6|SPBC902.01c|gamma tubulin complex Spc98/GCP3 s...    26   6.5  
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ...    26   6.5  
SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr ...    26   8.6  

>SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1687

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 12/44 (27%), Positives = 26/44 (59%), Gaps = 3/44 (6%)
 Frame = +1

Query: 169 FGFQNVGSFIRECNGTTLRYDQACLSILTDQ---EVTIWSQYAE 291
           + FQ +GSF+++     L    AC++++ D+   E+ ++S + E
Sbjct: 586 WSFQTLGSFVKQLPSRILINSTACVNVILDRIWCELCMFSYFRE 629


>SPAP27G11.12 |||human down-regulated in multiple cancers-1 homolog
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 797

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
 Frame = -3

Query: 387 VFQSVEQSVGGADYNRIRLRERCCWQQFAPITLRILAPYSNFLIGQNTQTRLVV-TQRST 211
           +  S E + G   YN  R  +    + +  I L  L PYS+F I  +  +RL+    +ST
Sbjct: 272 ILMSEENNNGTPCYNNYRSSKNTLPKNYFSILLSKLQPYSDFQIILDGMSRLLYPPMQST 331

Query: 210 I 208
           I
Sbjct: 332 I 332


>SPAC1851.03 |ckb1||CK2 family regulatory subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 231

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 16/45 (35%), Positives = 21/45 (46%)
 Frame = -3

Query: 618 PRVESTGHHPFPDALHDVPHCGHGEQYQDRCQDREVGGVRFRRHA 484
           PRV   G    P  L D+ H    + Y  RC+D  V   + +RHA
Sbjct: 114 PRVLCNGQPMLPVGLSDIAHTKSVKLYCPRCED--VYTPKSQRHA 156


>SPBC428.20c |alp6|SPBC902.01c|gamma tubulin complex Spc98/GCP3
           subunit Alp6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 821

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = -3

Query: 339 IRLRERCCWQQFAPITLRILAPYSNFLIGQNTQTRLV 229
           + +R    W Q A + LRIL+   N  + Q  + RL+
Sbjct: 310 VTIRRCIAWTQVAKLKLRILSSVVNDNMNQENKKRLI 346


>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 2493

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 25/99 (25%), Positives = 43/99 (43%), Gaps = 3/99 (3%)
 Frame = -3

Query: 495  RRHAGQAFV-LCALGEIE--NVLSIFAELIGSFAYYSTAVFQSVEQSVGGADYNRIRLRE 325
            R+ A +  V +CA+G I   N+  IF  L+ +F   +  V   +++SV         + +
Sbjct: 1469 RKRAMKRLVNVCAIGVIRSGNISQIFLPLLENFCLGNDTVQTLLDESVITIG----EIIK 1524

Query: 324  RCCWQQFAPITLRILAPYSNFLIGQNTQTRLVVTQRSTI 208
               W Q+  I  R ++   N  I Q    RL+    S +
Sbjct: 1525 WAHWNQYQAILKRYVSLLKNNAIDQKVVVRLITAVVSAL 1563


>SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1337

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +2

Query: 593 WWPVDSTRGSLLEKIT 640
           WWP+ S R SLL ++T
Sbjct: 847 WWPLRSIRRSLLSQLT 862


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,406,591
Number of Sequences: 5004
Number of extensions: 65513
Number of successful extensions: 160
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 160
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 466510270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)